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3TDJ

Crystal structure of the GluA2 ligand-binding domain (S1S2J-L483Y-N754S) in complex with glutamate and BPAM-97 at 1.95 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0015276molecular_functionligand-gated monoatomic ion channel activity
A0016020cellular_componentmembrane
B0015276molecular_functionligand-gated monoatomic ion channel activity
B0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GLU A 401
ChainResidue
ATYR61
AHOH279
AHOH292
AHOH318
APRO89
ALEU90
ATHR91
AARG96
AGLY141
ASER142
ATHR143
AGLU193

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 265
ChainResidue
AALA63
ASER140
ALYS144
AARG148
AHOH333
AHOH374
AHOH425

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 266
ChainResidue
AARG163

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 267
ChainResidue
AALA153

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 268
ChainResidue
ALYS240
AGLN244
AGOL269
AHOH447
BLYS151
BHOH513

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 269
ChainResidue
ALYS240
AGLU243
AGOL268
AHOH404
AHOH447
BARG149

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 270
ChainResidue
AARG148
ATRP159
AARG163

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 271
ChainResidue
AASP248
AHOH392
BASN214
BASP216
BSER217

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 272
ChainResidue
AMET19
AHIS23
AARG31
AHOH360
AHOH504
BLYS183

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 273
ChainResidue
ALYS116
ALYS117
ATHR119

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 274
ChainResidue
ALYS50
ATYR51

site_idBC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 3TJ B 400
ChainResidue
ALYS104
APRO105
APHE106
AMET107
ASER108
ASER242
BILE92
BPRO105
BMET107
BSER108
BSER217
BLYS218
BGLY219
B3TJ265

site_idBC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 3TJ B 265
ChainResidue
AILE92
APRO105
ASER108
ASER217
ALYS218
AGLY219
AHOH428
BLYS104
BPRO105
BPHE106
BMET107
BSER108
BSER242
B3TJ400

site_idBC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE GLU B 399
ChainResidue
BTYR61
BPRO89
BLEU90
BTHR91
BARG96
BLEU138
BGLY141
BSER142
BTHR143
BGLU193
BHOH277
BHOH281
BHOH319

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 266
ChainResidue
BSER140
BLYS144
BARG148
BHOH315
BHOH356
BHOH438

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 267
ChainResidue
BARG148
BTRP159
BARG163
BHOH540

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 268
ChainResidue
BGLY62
BALA63
BTRP71
BTHR93
BARG96
BGLU145
BHOH315
BHOH426
BHOH439

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 269
ChainResidue
BSER108
BSER194
BGLU198
BASN214
BHOH361
BHOH410

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 270
ChainResidue
ALYS258
BHIS23
BARG31
BHOH341

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 271
ChainResidue
BGLU27
BGLY28
BARG31
BLYS52
BHOH371

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 272
ChainResidue
BLYS116
BLYS185
BHOH374

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 273
ChainResidue
BLYS4
BTHR5
BHOH465

site_idCC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 274
ChainResidue
BLYS82
BLYS116

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:11086992, ECO:0000269|PubMed:16483599, ECO:0007744|PDB:1FTJ, ECO:0007744|PDB:2CMO
ChainResidueDetails
APRO89
BSER142
BTHR143
BGLU193
ATHR91
AARG96
ASER142
ATHR143
AGLU193
BPRO89
BTHR91
BARG96

site_idSWS_FT_FI2
Number of Residues6
DetailsSITE: Interaction with the cone snail toxin Con-ikot-ikot => ECO:0000269|PubMed:25103405
ChainResidueDetails
AARG64
AARG148
ALYS240
BARG64
BARG148
BLYS240

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Crucial to convey clamshell closure to channel opening => ECO:0000269|PubMed:25103405
ChainResidueDetails
AILE121
BILE121

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PKC => ECO:0000269|PubMed:8848293
ChainResidueDetails
ASER150
BSER150

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PKG => ECO:0000269|PubMed:8848293
ChainResidueDetails
ASER184
BSER184

site_idSWS_FT_FI6
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN3
BASN3

222036

PDB entries from 2024-07-03

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