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3T4H

Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(3-nitrobenzyl)-L-cysteine

Functional Information from GO Data
ChainGOidnamespacecontents
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0006307biological_processDNA alkylation repair
B0008198molecular_functionferrous iron binding
B0035513biological_processoxidative RNA demethylation
B0035515molecular_functionoxidative RNA demethylase activity
B0035516molecular_functionbroad specificity oxidative DNA demethylase activity
B0042245biological_processRNA repair
B0046872molecular_functionmetal ion binding
B0051213molecular_functiondioxygenase activity
B0070989biological_processoxidative demethylation
B0072702biological_processresponse to methyl methanesulfonate
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE B 300
ChainResidue
BHIS131
BASP133
BHIS187
BMD5217
BHOH386

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE EPE B 1
ChainResidue
BLEU128
BSER129
BHIS131
BASP133
BARG210
BMD5217
BHOH232
BHOH302
BHOH303
BMET57
BMET61
BTRP69
BLEU118

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE MD5 B 217
ChainResidue
BEPE1
BLEU118
BASN120
BTYR122
BLEU128
BHIS131
BASP133
BSER145
BPHE154
BPHE156
BTRP178
BSER182
BPHE185
BHIS187
BILE189
BARG204
BASN206
BTHR208
BARG210
BFE300
BHOH366
BHOH386

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:16482161, ECO:0000269|PubMed:20084272
ChainResidueDetails
BTRP69
BASP135
BARG161

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING:
ChainResidueDetails
BTYR76
BASN120
BARG204

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00805, ECO:0000269|PubMed:16482161
ChainResidueDetails
BHIS131
BASP133
BHIS187

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PDB entries from 2024-06-12

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