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3T4H

Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(3-nitrobenzyl)-L-cysteine

Functional Information from GO Data
ChainGOidnamespacecontents
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006281biological_processDNA repair
B0006307biological_processDNA alkylation repair
B0006974biological_processDNA damage response
B0008198molecular_functionferrous iron binding
B0016491molecular_functionoxidoreductase activity
B0035513biological_processoxidative RNA demethylation
B0035515molecular_functionoxidative RNA demethylase activity
B0035516molecular_functionbroad specificity oxidative DNA demethylase activity
B0042245biological_processRNA repair
B0046872molecular_functionmetal ion binding
B0051213molecular_functiondioxygenase activity
B0070989biological_processoxidative demethylation
B0072702biological_processresponse to methyl methanesulfonate
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE B 300
ChainResidue
BHIS131
BASP133
BHIS187
BMD5217
BHOH386

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE EPE B 1
ChainResidue
BLEU128
BSER129
BHIS131
BASP133
BARG210
BMD5217
BHOH232
BHOH302
BHOH303
BMET57
BMET61
BTRP69
BLEU118

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE MD5 B 217
ChainResidue
BEPE1
BLEU118
BASN120
BTYR122
BLEU128
BHIS131
BASP133
BSER145
BPHE154
BPHE156
BTRP178
BSER182
BPHE185
BHIS187
BILE189
BARG204
BASN206
BTHR208
BARG210
BFE300
BHOH366
BHOH386

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues100
DetailsDomain: {"description":"Fe2OG dioxygenase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00805","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16482161","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20084272","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues10
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00805","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"16482161","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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