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3T13

Crystal structure of Staphylococcal nuclease variant Delta+PHS A69G at cryogenic temperature

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004518molecular_functionnuclease activity
B0003676molecular_functionnucleic acid binding
B0004518molecular_functionnuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 150
ChainResidue
AASP21
AARG35
AGLU43
AARG87
ACA152
AHOH239
AHOH248

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 151
ChainResidue
AHOH383
AHOH407
ALYS97
AHOH316

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 152
ChainResidue
AASP21
ATHR41
AGLU43
APO4150
AHOH178
AHOH225

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MRD A 153
ChainResidue
AGLU10
ATYR27
ALYS28

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE MRD A 154
ChainResidue
AARG35
ALEU36
ALEU38
AASP40
AASP83
AARG87
AALA112
ATYR115
AHOH170
AHOH231
AHOH232

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 B 150
ChainResidue
ALYS70
ALYS71
BASP21
BARG35
BGLU43
BARG87
BCA153
BHOH159
BHOH274
BHOH294

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MRD B 151
ChainResidue
BGLU10
BTYR27
BLYS28
BPHE76
BHOH209

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MRD B 152
ChainResidue
BARG35
BLEU36
BASP83
BARG87
BALA112
BTYR115
BHOH203
BHOH326

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 153
ChainResidue
BASP21
BTHR41
BGLU43
BPO4150
BHOH239
BHOH294

Functional Information from PROSITE/UniProt
site_idPS01123
Number of Residues25
DetailsTNASE_1 Thermonuclease family signature 1. DGDTVkLmykgqpmtf.RLllVDtPE
ChainResidueDetails
AASP19-GLU43

site_idPS01284
Number of Residues11
DetailsTNASE_2 Thermonuclease family signature 2. DKYGRgLAyIY
ChainResidueDetails
AASP83-TYR93

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:288045
ChainResidueDetails
AARG35
AGLU43
ATYR93
BARG35
BGLU43
BTYR93

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AASP21
AASP40
ATHR41
BASP21
BASP40
BTHR41

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
AASP21metal ligand
AARG35electrostatic stabiliser, hydrogen bond donor
AASP40metal ligand
ATHR41metal ligand
AGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ATYR93electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA2
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
BASP21metal ligand
BARG35electrostatic stabiliser, hydrogen bond donor
BASP40metal ligand
BTHR41metal ligand
BGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BTYR93electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

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PDB entries from 2024-07-10

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