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3SXX

Hansenula polymorpha copper amine oxidase-1 in complex with Co(II)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005507molecular_functioncopper ion binding
A0005777cellular_componentperoxisome
A0008131molecular_functionprimary methylamine oxidase activity
A0009308biological_processamine metabolic process
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
A0048038molecular_functionquinone binding
A0052595molecular_functionaliphatic amine oxidase activity
B0005507molecular_functioncopper ion binding
B0005777cellular_componentperoxisome
B0008131molecular_functionprimary methylamine oxidase activity
B0009308biological_processamine metabolic process
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
B0048038molecular_functionquinone binding
B0052595molecular_functionaliphatic amine oxidase activity
C0005507molecular_functioncopper ion binding
C0005777cellular_componentperoxisome
C0008131molecular_functionprimary methylamine oxidase activity
C0009308biological_processamine metabolic process
C0016491molecular_functionoxidoreductase activity
C0046872molecular_functionmetal ion binding
C0048038molecular_functionquinone binding
C0052595molecular_functionaliphatic amine oxidase activity
D0005507molecular_functioncopper ion binding
D0005777cellular_componentperoxisome
D0008131molecular_functionprimary methylamine oxidase activity
D0009308biological_processamine metabolic process
D0016491molecular_functionoxidoreductase activity
D0046872molecular_functionmetal ion binding
D0048038molecular_functionquinone binding
D0052595molecular_functionaliphatic amine oxidase activity
E0005507molecular_functioncopper ion binding
E0005777cellular_componentperoxisome
E0008131molecular_functionprimary methylamine oxidase activity
E0009308biological_processamine metabolic process
E0016491molecular_functionoxidoreductase activity
E0046872molecular_functionmetal ion binding
E0048038molecular_functionquinone binding
E0052595molecular_functionaliphatic amine oxidase activity
F0005507molecular_functioncopper ion binding
F0005777cellular_componentperoxisome
F0008131molecular_functionprimary methylamine oxidase activity
F0009308biological_processamine metabolic process
F0016491molecular_functionoxidoreductase activity
F0046872molecular_functionmetal ion binding
F0048038molecular_functionquinone binding
F0052595molecular_functionaliphatic amine oxidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO A 801
ChainResidue
ATYR405
ALEU425
AHIS456
AHIS458
AHIS624
AHOH1628
AHOH1736

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 802
ChainResidue
AVAL215
AGLY435
AASP436
AASN450
AHOH1031
AHOH1083
AARG213
ALYS214

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GOL A 803
ChainResidue
AGLU368
ALYS393
ATYR410
AVAL412
AARG420
AASP422
AARG424
AHOH1007
AHOH1431
AHOH1458
AHOH1650
BGLY371

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 804
ChainResidue
AARG61
AILE65
AASP471
AASP613
AHOH1303
AHOH1326
AHOH1589

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 805
ChainResidue
AGLN66
AGLN70
AGLY72
ETYR448
FTYR534
FHOH912
FHOH1875

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 806
ChainResidue
APRO484
ATYR485
ATYR499
AHOH1447
AHOH1647
BPRO442

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 807
ChainResidue
AHIS23
ATYR64
ALYS68
AVAL258
ALYS265
APHE266
AASP280
AHOH920
AHOH1490

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 808
ChainResidue
AHIS218
ALYS219
ATYR448
AHOH1630
BTYR534

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 809
ChainResidue
AARG57
AGLU93
AGLY94
AGLU105
AARG107
AHOH1763
AHOH1765

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 810
ChainResidue
ATYR160
ALEU558
ALYS561
ASER591
AHOH1903
FLYS561
FASP593
FGOL808
FHOH1087

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 811
ChainResidue
AGLY142
APRO144
AGLU147
ATYR177
ALYS217
AHOH1295
EHOH1647

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO B 801
ChainResidue
BTYR405
BLEU425
BHIS456
BHIS458
BHIS624
BHOH1629
BHOH1736

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 802
ChainResidue
BARG213
BLYS214
BVAL215
BGLY435
BASP436
BASN450
BHOH1025
BHOH1663

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 803
ChainResidue
BGLU368
BLYS393
BTYR410
BASP422
BHOH1005
BHOH1125
BHOH1462

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 804
ChainResidue
APRO442
BPRO484
BTYR485
BTYR499
BHOH1501
BHOH1826

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 805
ChainResidue
BHIS23
BTYR64
BLYS68
BVAL258
BLYS265
BPHE266
BHIS267
BASP280
BHOH1211

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 806
ChainResidue
BHIS218
BLYS219
BHOH1901

site_idBC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 807
ChainResidue
BTYR160
BLEU558
BLYS561
BSER591
BHOH1484
BHOH1712
CLYS561
CASP593
CGOL809
CHOH1147

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 808
ChainResidue
BGLY142
BPRO144
BGLU147
BTYR177
BHOH1327
DHOH1360

site_idCC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 809
ChainResidue
BPHE310
BHOH1069
BHOH1162
BHOH1281
BHOH1395
BHOH1792
BHOH1840
CGLY594
CHOH1160

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO C 801
ChainResidue
CTYR405
CHIS456
CHIS458
CHIS624
CHOH1633
CHOH1731

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 802
ChainResidue
CARG213
CLYS214
CVAL215
CGLY435
CASP436
CHOH1076
CHOH1170

site_idCC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL C 803
ChainResidue
CGLU368
CLYS393
CTYR410
CVAL412
CARG420
CASP422
CHOH1047
CHOH1767
DGLY371

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 C 804
ChainResidue
CHIS218
CLYS219
CHOH1497
CHOH1608

site_idCC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 805
ChainResidue
CPRO484
CTYR485
CTYR499
CHOH1395
CHOH1662
DPRO442
DTRP443

site_idCC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 806
ChainResidue
CHIS23
CTYR64
CLYS68
CLYS265
CASP280
CHOH1067
CHOH1578
CHOH1586

site_idCC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 807
ChainResidue
BGLN66
BGLN70
BGLY72
CTYR534
CTHR650
CHOH1032
CHOH1265

site_idDC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL C 808
ChainResidue
BGLY594
BHOH1154
CARG163
CPHE310
CHOH1113
CHOH1181
CHOH1274
CHOH1367
CHOH1837

site_idDC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 809
ChainResidue
BLYS561
BASP593
BGOL807
CLEU558
CLYS561
CSER591
CHOH1147
CHOH1668

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 810
ChainResidue
BTRP67
BLYS68

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO D 801
ChainResidue
DTYR405
DHIS456
DHIS458
DHIS624
DHOH1642
DHOH1745

site_idDC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 802
ChainResidue
DHIS23
DTYR64
DLYS68
DLYS265
DASP280
DHOH1167
DHOH1870

site_idDC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL D 803
ChainResidue
DGLU368
DLYS393
DTYR410
DVAL412
DARG420
DASP422
DARG424
DHOH1051
DHOH1596
DHOH1772
DHOH1934

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL D 804
ChainResidue
DPRO484
DTYR485
DTYR499
DHOH1586
DHOH1643

site_idDC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL D 805
ChainResidue
DSER179
DASP183
DHIS188
DHIS218
DLYS219
DHIS220
DHOH1313
DHOH1550

site_idDC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 806
ChainResidue
BHOH1152
BHOH1742
CHOH1101
DHIS218
DLYS219
DTYR448

site_idEC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO E 801
ChainResidue
ETYR405
EHIS456
EHIS458
EHIS624
EHOH1637
EHOH1731

site_idEC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL E 802
ChainResidue
EHIS23
ETYR64
ELYS68
ELYS265
EASP280
EHOH1225
EHOH1368
EHOH1756

site_idEC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL E 803
ChainResidue
EGLU368
ELYS393
ETYR410
EVAL412
EARG420
EASP422
EARG424
EHOH922
EHOH1620
FGLY371

site_idEC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL E 804
ChainResidue
EPRO484
ETYR485
EHOH1658
EHOH1852

site_idEC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL E 805
ChainResidue
AASN529
AHOH1892
ELYS214
EVAL215
EASP436
EASN450
EHOH1050
EHOH1151
EHOH1326

site_idEC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL E 806
ChainResidue
AHOH1571
AHOH1688
EHIS218
ELYS219
ETYR448
FHOH1037

site_idEC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO F 801
ChainResidue
FTYR405
FLEU425
FHIS456
FHIS458
FHIS624
FHOH1599
FHOH1705

site_idEC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL F 802
ChainResidue
FHIS23
FTYR64
FLYS68
FLYS265
FASP280
FHOH1093
FHOH1490

site_idEC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL F 803
ChainResidue
FARG213
FLYS214
FVAL215
FGLY435
FASP436
FHOH1095
FHOH1725

site_idFC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE GOL F 804
ChainResidue
EGLY371
FGLU368
FLYS393
FTYR410
FVAL412
FARG420
FASP422
FARG424
FHOH1059
FHOH1133
FHOH1634
FHOH1696
FHOH1703
FHOH1896

site_idFC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL F 805
ChainResidue
EPRO442
FPRO484
FTYR485
FTYR499
FHOH1181
FHOH1527

site_idFC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 F 806
ChainResidue
FHIS218
FLYS219
FHOH1675
FHOH1887

site_idFC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL F 807
ChainResidue
ATRP67
ALYS68

site_idFC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL F 808
ChainResidue
ALYS561
AASP593
AGOL810
FTYR160
FLEU558
FLYS561
FSER591
FHOH1087
FHOH1623

site_idFC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL F 809
ChainResidue
AGLY594
AHOH952
FARG163
FPHE310
FHOH934
FHOH1190
FHOH1204
FHOH1313
FHOH1857

Functional Information from PROSITE/UniProt
site_idPS01159
Number of Residues26
DetailsWW_DOMAIN_1 WW/rsp5/WWP domain signature. WgtgkrlqqalvYYrsdedd.SQYSHP
ChainResidueDetails
ATRP164-PRO189

site_idPS01164
Number of Residues14
DetailsCOPPER_AMINE_OXID_1 Copper amine oxidase topaquinone signature. LVVsqifTaaNYEY
ChainResidueDetails
ALEU394-TYR407

site_idPS01165
Number of Residues14
DetailsCOPPER_AMINE_OXID_2 Copper amine oxidase copper-binding site signature. TfGitHFpapEDfP
ChainResidueDetails
ATHR619-PRO632

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:9551552
ChainResidueDetails
AASP319
BASP319
CASP319
DASP319
EASP319
FASP319

site_idSWS_FT_FI2
Number of Residues6
DetailsACT_SITE: Schiff-base intermediate with substrate; via topaquinone => ECO:0000269|PubMed:10933787, ECO:0000269|PubMed:9551552, ECO:0007744|PDB:1EKM, ECO:0007744|PDB:3NBB, ECO:0007744|PDB:3NBJ, ECO:0007744|PDB:3T0U, ECO:0007744|PDB:4KFF
ChainResidueDetails
ATYR405
BTYR405
CTYR405
DTYR405
ETYR405
FTYR405

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0007744|PDB:4EV2, ECO:0007744|PDB:4EV5
ChainResidueDetails
AALA317
BALA317
CALA317
DALA317
EALA317
FALA317

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P46883
ChainResidueDetails
AALA402
BALA402
CALA402
DALA402
EALA402
FALA402

site_idSWS_FT_FI5
Number of Residues18
DetailsBINDING: BINDING => ECO:0000269|PubMed:10933787, ECO:0000269|PubMed:9551552, ECO:0007744|PDB:1A2V, ECO:0007744|PDB:1EKM, ECO:0007744|PDB:2OOV, ECO:0007744|PDB:2OQE, ECO:0007744|PDB:3N9H, ECO:0007744|PDB:3NBB, ECO:0007744|PDB:3NBJ, ECO:0007744|PDB:3T0U, ECO:0007744|PDB:4EV2, ECO:0007744|PDB:4EV5, ECO:0007744|PDB:4KFD, ECO:0007744|PDB:4KFE, ECO:0007744|PDB:4KFF
ChainResidueDetails
AHIS456
DHIS456
DHIS458
DHIS624
EHIS456
EHIS458
EHIS624
FHIS456
FHIS458
FHIS624
AHIS458
AHIS624
BHIS456
BHIS458
BHIS624
CHIS456
CHIS458
CHIS624

site_idSWS_FT_FI6
Number of Residues18
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q43077
ChainResidueDetails
AASP465
DASP465
DASP613
DILE614
EASP465
EASP613
EILE614
FASP465
FASP613
FILE614
AASP613
AILE614
BASP465
BASP613
BILE614
CASP465
CASP613
CILE614

site_idSWS_FT_FI7
Number of Residues6
DetailsMOD_RES: 2',4',5'-topaquinone => ECO:0000269|PubMed:9551552, ECO:0007744|PDB:1A2V, ECO:0007744|PDB:2OQE
ChainResidueDetails
ATYR405
BTYR405
CTYR405
DTYR405
ETYR405
FTYR405

site_idSWS_FT_FI8
Number of Residues6
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:9551552
ChainResidueDetails
AASN243
BASN243
CASN243
DASN243
EASN243
FASN243

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PDB entries from 2024-10-09

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