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3SXQ

Structure of a hexameric multiheme c nitrite reductase from the extremophile bacterium Thiolkalivibrio paradoxus

Functional Information from GO Data
ChainGOidnamespacecontents
A0016491molecular_functionoxidoreductase activity
A0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0016491molecular_functionoxidoreductase activity
B0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC A 1004
ChainResidue
AHIS113
AARG242
ACYS299
AHIS300
ATYR303
ACYS305
AHIS361
AASN486
ACO527
AHOH548
AHOH568
AALA114
AHOH622
AHOH769
AHOH793
AHEC1006
AASP125
AHIS126
AVAL129
AARG131
ACYS184
ACYS187
ALYS188

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HEC A 1005
ChainResidue
ACYS66
AHIS70
AGLN73
APHE77
AASN226
ACYS227
ACYS230
AHIS231
AARG386
ATYR395
ATHR396
AHIS398
AHOH627
AHOH874
AHEC1003

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC A 1006
ChainResidue
ASER84
APRO116
AARG117
AHIS119
APHE121
AMET122
AASP125
ACYS187
ALYS188
AMET229
AMET295
ACYS296
ACYS299
AHIS300
AHIS383
APRO400
AHOH540
AHOH544
AHOH577
AHEC1004
AHEC1007
AHOH1015

site_idAC4
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HEC A 1007
ChainResidue
AHIS300
AGLU363
ALEU364
APHE367
AHIS372
AVAL377
ATHR378
ACYS379
ACYS382
AHIS383
ATHR402
AARG404
AILE427
ALYS431
AASN486
APHE490
AHIS491
AGOL534
AHOH577
AHOH708
AHOH881
AHEC1006
AHOH1015
AHOH1170

site_idAC5
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEC A 1008
ChainResidue
AHOH982
AHOH1149
ASER141
ATRP142
AGLN143
ATHR371
AHIS372
AVAL377
AALA410
ACYS411
ACYS414
AHIS415
ATRP418
AILE427
APHE490
AGOL533
AHOH945

site_idAC6
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC A 1002
ChainResidue
ACYS14
ATYR15
AHIS18
AILE21
AHIS25
AVAL33
AASN34
ACYS35
ACYS38
AHIS39
AILE193
ATYR228
APRO233
AHIS234
AARG239
APHE274
AARG276
AARG282
AHOH676
AHOH892
AHEC1001
AHEC1003

site_idAC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HEC A 1003
ChainResidue
ALYS29
AHIS30
AVAL33
AHIS37
ACYS66
ASER68
ACYS69
AHIS70
ACYS227
AHIS231
ATHR236
AHOH919
AHEC1002
AHEC1005
AHOH1139

site_idAC8
Number of Residues27
DetailsBINDING SITE FOR RESIDUE HEC A 1001
ChainResidue
AGLN13
ACYS14
ACYS17
AHIS18
AHIS39
AHIS44
AVAL45
AALA48
ASER49
AALA50
AARG51
AARG51
AARG52
AMET53
AARG56
APRO57
ATHR59
ALEU194
AARG276
AHOH555
AHOH557
AHOH633
AHOH785
AHOH892
AHOH893
AHOH924
AHEC1002

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 526
ChainResidue
AGLU302
ATYR303
ALYS358
AGLN360
AHOH596
AHOH794

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO A 527
ChainResidue
ALYS90
AHIS113
AHOH548
AHOH568
AHOH623
AHOH769
AHEC1004

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO A 528
ChainResidue
AHIS85
AGLU88
AHOH1072
AHOH1073
AHOH1074
AHOH1075

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA A 529
ChainResidue
AHIS82
AHOH883
AHOH923

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 530
ChainResidue
AGLY154
AALA155
ATRP156
AHIS222
AHOH997

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 531
ChainResidue
AMET406
AMET407
AASN408
AARG409

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 532
ChainResidue
AHIS18
ATHR19
AGLN20
AILE21
APHE274
AHOH670
AHOH892
AHOH893

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 533
ChainResidue
APHE367
ASER370
ATHR371
AHIS372
APHE490
AHIS491
APRO493
AHOH777
AHEC1008

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 534
ChainResidue
AARG96
AGLU115
APRO116
AASN486
AHOH658
AHEC1007
AHOH1015

site_idBC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 535
ChainResidue
ATYR259
AASN331
ATRP368
AGLY369
AHOH551
AHOH789
AHOH857
AHOH999

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 536
ChainResidue
AGLN143
AHIS415
AASP416
AGLY417
ATRP418
AHOH951

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 537
ChainResidue
AARG153
AHOH562
AHOH1191
BLYS393
BGLU394

site_idCC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE HEC B 1004
ChainResidue
BHIS113
BALA114
BASP125
BHIS126
BVAL129
BARG131
BCYS184
BCYS187
BLYS188
BARG242
BCYS299
BHIS300
BTYR303
BCYS305
BPHE327
BHIS361
BASN486
BCO527
BHOH572
BHOH590
BHOH644
BHOH756
BHOH773
BHOH795
BHEC1006

site_idCC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEC B 1005
ChainResidue
BCYS66
BHIS70
BGLN73
BPHE77
BASN226
BCYS227
BCYS230
BHIS231
BARG386
BTYR395
BTHR396
BHIS398
BHOH587
BHOH655
BHOH876
BHEC1003

site_idCC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC B 1006
ChainResidue
BSER84
BPRO116
BARG117
BHIS119
BPHE121
BMET122
BASP125
BCYS187
BLYS188
BVAL225
BMET229
BMET295
BCYS296
BCYS299
BHIS300
BHIS383
BPRO400
BHOH567
BHOH600
BHEC1004
BHEC1007
BHOH1017
BHOH1176

site_idCC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC B 1007
ChainResidue
BHIS300
BGLU363
BPHE367
BHIS372
BVAL377
BTHR378
BCYS379
BCYS382
BHIS383
BTHR402
BARG404
BILE427
BLYS431
BASN486
BPHE490
BHIS491
BGOL534
BHOH600
BHOH739
BHOH883
BHEC1006
BHOH1017
BHOH1169

site_idCC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HEC B 1008
ChainResidue
BSER141
BTRP142
BGLN143
BTHR371
BHIS372
BVAL377
BALA410
BCYS411
BCYS414
BHIS415
BTRP418
BILE427
BPHE490
BHOH947
BHOH984

site_idCC8
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC B 1002
ChainResidue
BCYS14
BTYR15
BHIS18
BILE21
BHIS25
BVAL33
BASN34
BCYS35
BCYS38
BHIS39
BTYR228
BPRO233
BHIS234
BARG239
BPHE274
BARG276
BARG282
BHOH712
BHOH894
BHEC1001
BHEC1003
BHOH1177

site_idCC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEC B 1003
ChainResidue
BLYS29
BHIS30
BVAL33
BHIS37
BALA65
BCYS66
BSER68
BCYS69
BHIS70
BCYS227
BHIS231
BTHR236
BHOH648
BHOH921
BHEC1002
BHEC1005

site_idDC1
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HEC B 1001
ChainResidue
BGLN13
BCYS14
BCYS17
BHIS18
BHIS39
BHIS44
BVAL45
BALA48
BSER49
BALA50
BARG52
BMET53
BARG56
BPRO57
BTHR59
BLEU194
BARG276
BGLY277
BHOH650
BHOH667
BHOH788
BHOH923
BHEC1002
BHOH1178

site_idDC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 526
ChainResidue
BGLU302
BTYR303
BLYS358
BGLN360
BHOH616
BHOH796

site_idDC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO B 527
ChainResidue
BLYS90
BHIS113
BHOH572
BHOH590
BHOH645
BHOH773
BHEC1004

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO B 528
ChainResidue
BHIS85
BGLU88
BHOH1073
BHOH1074
BHOH1075
BHOH1076

site_idDC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NA B 529
ChainResidue
BHIS82
BHOH885

site_idDC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 530
ChainResidue
BGLY154
BALA155
BTRP156
BHIS222
BHOH689
BHOH999

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 531
ChainResidue
BMET406
BMET407
BASN408
BARG409
BHOH1060

site_idDC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 532
ChainResidue
BHIS60
BTHR61
BSER62
BHIS223
BHOH638
BHOH692
BHOH1091
BHOH1158

site_idDC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 533
ChainResidue
BPRO258
BTYR259
BTRP329
BHOH666

site_idEC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 534
ChainResidue
BARG96
BGLU115
BPRO116
BASN486
BHOH660
BHOH693
BHOH739
BHEC1007
BHOH1017

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 535
ChainResidue
BGLN143
BHIS415
BGLY417
BTRP418
BHOH953

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PDB entries from 2024-07-31

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