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3SV4

Crystal structure of the large fragment of DNA polymerase I from Thermus Aquaticus in an open binary complex with dT as templating nucleobase

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A 1
ChainResidue
AARG313
ATRP318

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A 833
ChainResidue
AHOH11
APHE724

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 834
ChainResidue
AARG617
APHE632
AGLY635
APRO816
AGLU818

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 7
ChainResidue
AGLU786
AHOH885
AHOH886
AHOH887
AHOH888
AHOH889

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A 835
ChainResidue
AHOH207
APRO589
AGLN592
AARG593
AARG596
ASER829

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A 836
ChainResidue
AHOH94
AHOH151
AHIS621
AMET775
ALEU802
AALA814

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 837
ChainResidue
AHOH108
ALYS767
AHOH865

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A 838
ChainResidue
AHOH88
AASN485
ASER486
AARG487
AHOH874
CDG211
CDT212
CHOH225

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 839
ChainResidue
AHOH22
AHOH40
ALYS354
AASP355
AARG563

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 7
ChainResidue
BHOH2
BHOH4
BHOH5
BHOH6
BHOH115
CHOH218

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B 1
ChainResidue
AGLU337
APRO338
ATYR339
ALYS340
BDG101

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 7
ChainResidue
BHOH119
CHOH1
CHOH4
CHOH221
CHOH222
CHOH223

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

226707

PDB entries from 2024-10-30

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