3SS7
Crystal structure of holo D-serine dehydratase from Escherichia coli at 1.55 A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| X | 0005737 | cellular_component | cytoplasm |
| X | 0005829 | cellular_component | cytosol |
| X | 0006520 | biological_process | amino acid metabolic process |
| X | 0006974 | biological_process | DNA damage response |
| X | 0008721 | molecular_function | D-serine ammonia-lyase activity |
| X | 0016829 | molecular_function | lyase activity |
| X | 0016836 | molecular_function | hydro-lyase activity |
| X | 0030170 | molecular_function | pyridoxal phosphate binding |
| X | 0036088 | biological_process | D-serine catabolic process |
| X | 0046416 | biological_process | D-amino acid metabolic process |
| X | 0051410 | biological_process | detoxification of nitrogen compound |
| X | 0070178 | biological_process | D-serine metabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL X 501 |
| Chain | Residue |
| X | ALA392 |
| X | ARG396 |
| X | HOH699 |
| X | HOH943 |
| X | HOH1030 |
| site_id | AC2 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE PLP X 502 |
| Chain | Residue |
| X | GLY281 |
| X | GLY282 |
| X | GLY283 |
| X | PRO284 |
| X | LEU340 |
| X | GLU384 |
| X | THR424 |
| X | HOH781 |
| X | HOH884 |
| X | HOH993 |
| X | HOH997 |
| X | LYS118 |
| X | ASN170 |
| X | GLY279 |
| X | VAL280 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K X 503 |
| Chain | Residue |
| X | CYS278 |
| X | GLY279 |
| X | GLU305 |
| X | SER309 |
| X | CYS311 |
| X | HOH854 |
Functional Information from PROSITE/UniProt
| site_id | PS00165 |
| Number of Residues | 15 |
| Details | DEHYDRATASE_SER_THR Serine/threonine dehydratases pyridoxal-phosphate attachment site. DshlpiSGSIKARGG |
| Chain | Residue | Details |
| X | ASP108-GLY122 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-(pyridoxal phosphate)lysine","evidences":[{"source":"PubMed","id":"22197591","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3SS7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3SS9","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
