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3SPL

Crystal structure of aprataxin ortholog Hnt3 in complex with DNA and AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
B0003824molecular_functioncatalytic activity
C0003824molecular_functioncatalytic activity
D0003824molecular_functioncatalytic activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 601
ChainResidue
ACYS200
ACYS203
AHIS217
AGLU221

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE AMP A 800
ChainResidue
ALYS67
AHIS71
AHIS138
APRO141
ASER142
AMET143
AHIS147
AHIS149
AHOH237
AHOH251
AHOH544
EHOH329
ALEU38
ATYR41
AASP63
AMET64
APHE65

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 901
ChainResidue
AHIS93
ASER95
ALEU96
AHOH518
AHOH733

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 902
ChainResidue
ASER121
AGLN122
AHOH377
AHOH738

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 903
ChainResidue
AHIS85
AALA139
AGLY140
APRO141
AARG187
AGLY188
AHOH261
BLYS199

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 904
ChainResidue
AARG202
ATRP225
ALYS228
AHOH454
AHOH658
DHIS83

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 601
ChainResidue
BCYS200
BCYS203
BHIS217
BGLU221

site_idAC8
Number of Residues17
DetailsBINDING SITE FOR RESIDUE AMP B 800
ChainResidue
BLEU38
BTYR41
BASP63
BMET64
BPHE65
BLYS67
BHIS71
BHIS138
BPRO141
BSER142
BMET143
BHIS147
BHIS149
BHOH238
BHOH245
BHOH345
BHOH510

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 901
ChainResidue
BHIS93
BSER95
BLEU96
BHOH281
BHOH752

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 902
ChainResidue
BSER121
BGLN122
BHOH247
BHOH569
BHOH697
CHOH351

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 903
ChainResidue
BHIS85
BGLY140
BPRO141
BARG187
BGLY188
BHOH258
CLYS199

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 904
ChainResidue
AHIS83
BARG202
BTRP225

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 601
ChainResidue
CCYS200
CCYS203
CHIS217
CGLU221

site_idBC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE AMP C 800
ChainResidue
CSER142
CMET143
CHIS147
CHIS149
CHOH247
CHOH257
CHOH424
CLEU38
CTYR41
CASP63
CMET64
CPHE65
CLYS67
CHIS71
CHIS138
CPRO141

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 901
ChainResidue
CHIS93
CSER95
CLEU96
CHOH277
CHOH786

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 902
ChainResidue
BHOH422
CSER121
CGLN122
CHOH790

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 903
ChainResidue
CHIS85
CALA139
CGLY140
CARG187
CHOH294

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 904
ChainResidue
BHIS83
CARG202
CTRP225

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 601
ChainResidue
DCYS200
DCYS203
DHIS217
DGLU221

site_idCC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE AMP D 800
ChainResidue
DLEU38
DTYR41
DASP63
DMET64
DPHE65
DLYS67
DHIS71
DHIS138
DPRO141
DSER142
DMET143
DHIS147
DHIS149
DHOH246
DHOH319
DHOH531

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 901
ChainResidue
DLEU81
DHIS93
DSER95
DLEU96
DHOH254
DHOH776

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 902
ChainResidue
DSER121
DGLN122
DHOH477
DHOH589

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 903
ChainResidue
ALYS199
DHIS85
DGLY140
DARG187
DGLY188
DHOH268

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 904
ChainResidue
CHIS83
CHOH634
DARG202
DTRP225

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Nucleophile => ECO:0000305|PubMed:21984210, ECO:0000305|PubMed:26007660
ChainResidueDetails
AHIS147
BHIS147
CHIS147
DHIS147

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:21984210, ECO:0000269|PubMed:26007660, ECO:0007744|PDB:3SPD, ECO:0007744|PDB:3SPL, ECO:0007744|PDB:4XBA
ChainResidueDetails
ACYS200
CCYS203
CHIS217
CGLU221
DCYS200
DCYS203
DHIS217
DGLU221
ACYS203
AHIS217
AGLU221
BCYS200
BCYS203
BHIS217
BGLU221
CCYS200

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000269|PubMed:21984210, ECO:0000269|PubMed:26007660
ChainResidueDetails
ATYR41
BTYR41
CTYR41
DTYR41

219140

PDB entries from 2024-05-01

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