3SFU
crystal structure of murine norovirus RNA dependent RNA polymerase in complex with ribavirin
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| A | 0004386 | molecular_function | helicase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0006351 | biological_process | DNA-templated transcription |
| A | 0039694 | biological_process | viral RNA genome replication |
| B | 0003723 | molecular_function | RNA binding |
| B | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| B | 0004386 | molecular_function | helicase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0006351 | biological_process | DNA-templated transcription |
| B | 0039694 | biological_process | viral RNA genome replication |
| C | 0003723 | molecular_function | RNA binding |
| C | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
| C | 0004386 | molecular_function | helicase activity |
| C | 0005524 | molecular_function | ATP binding |
| C | 0006351 | biological_process | DNA-templated transcription |
| C | 0039694 | biological_process | viral RNA genome replication |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE RBV A 601 |
| Chain | Residue |
| A | ASP250 |
| A | HOH866 |
| A | THR308 |
| A | THR309 |
| A | ASN312 |
| A | TYR344 |
| A | GLY345 |
| A | ASP346 |
| A | ASP347 |
| A | HOH844 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 A 602 |
| Chain | Residue |
| A | TRP134 |
| A | HOH766 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 603 |
| Chain | Residue |
| A | THR148 |
| A | HIS149 |
| A | ASN152 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 604 |
| Chain | Residue |
| A | HIS241 |
| A | THR387 |
| A | LEU388 |
| A | TRP405 |
| A | HOH763 |
| A | HOH857 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 605 |
| Chain | Residue |
| A | LYS29 |
| A | HIS426 |
| A | GLN427 |
| A | GLU431 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 606 |
| Chain | Residue |
| A | TYR246 |
| A | THR247 |
| A | ARG248 |
| A | HOH822 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 607 |
| Chain | Residue |
| A | ARG7 |
| A | PRO8 |
| A | SER9 |
| A | SER61 |
| A | ARG67 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 608 |
| Chain | Residue |
| A | LYS158 |
| A | SER159 |
| A | HOH843 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 A 609 |
| Chain | Residue |
| A | ARG408 |
| A | GOL615 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG A 610 |
| Chain | Residue |
| A | ASP243 |
| A | ASP347 |
| A | GLU348 |
| A | SER392 |
| A | HOH802 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 611 |
| Chain | Residue |
| A | SER27 |
| A | THR28 |
| A | LYS29 |
| A | ASN425 |
| site_id | BC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 612 |
| Chain | Residue |
| A | GLY400 |
| A | ASP401 |
| A | TRP405 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 614 |
| Chain | Residue |
| A | SER223 |
| A | MET224 |
| A | ASN225 |
| site_id | BC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 615 |
| Chain | Residue |
| A | ASP410 |
| A | ARG411 |
| A | HIS453 |
| A | SO4609 |
| site_id | BC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 616 |
| Chain | Residue |
| A | THR328 |
| A | LEU354 |
| A | GLU355 |
| B | THR328 |
| B | GLU355 |
| B | GOL613 |
| B | GOL618 |
| site_id | BC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 617 |
| Chain | Residue |
| A | ARG96 |
| A | PHE215 |
| A | ASN216 |
| A | PRO217 |
| A | ARG219 |
| A | MET336 |
| A | GLU340 |
| A | PHE341 |
| site_id | BC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 618 |
| Chain | Residue |
| A | PRO103 |
| A | GLN104 |
| A | LEU268 |
| A | PRO270 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 619 |
| Chain | Residue |
| A | SER115 |
| A | ASP207 |
| A | PRO306 |
| site_id | CC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 620 |
| Chain | Residue |
| A | PRO6 |
| A | ALA18 |
| A | TYR293 |
| site_id | CC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE RBV B 601 |
| Chain | Residue |
| B | ASP250 |
| B | THR309 |
| B | ASN312 |
| B | GLY345 |
| B | ASP346 |
| B | ASP347 |
| B | HOH747 |
| B | HOH776 |
| site_id | CC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 B 602 |
| Chain | Residue |
| B | HIS149 |
| B | ASN152 |
| site_id | CC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 B 603 |
| Chain | Residue |
| B | TYR246 |
| B | ARG248 |
| site_id | CC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 604 |
| Chain | Residue |
| B | HOH714 |
| A | LYS158 |
| B | LYS29 |
| B | HIS426 |
| B | GLN427 |
| site_id | CC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 605 |
| Chain | Residue |
| B | LYS158 |
| B | SER159 |
| B | HOH765 |
| site_id | CC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 606 |
| Chain | Residue |
| B | ASP410 |
| B | ARG411 |
| B | HIS453 |
| site_id | CC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 607 |
| Chain | Residue |
| B | GLY51 |
| B | SER52 |
| B | SER61 |
| B | LEU62 |
| B | GLN63 |
| site_id | CC9 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE SO4 B 608 |
| Chain | Residue |
| B | ARG408 |
| site_id | DC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG B 609 |
| Chain | Residue |
| B | ASP243 |
| B | ASP347 |
| B | GLU348 |
| B | SER392 |
| site_id | DC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 610 |
| Chain | Residue |
| B | SER223 |
| B | MET224 |
| B | ASN225 |
| site_id | DC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 611 |
| Chain | Residue |
| B | VAL325 |
| B | ARG329 |
| B | ASP331 |
| site_id | DC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL B 612 |
| Chain | Residue |
| B | SER27 |
| B | THR28 |
| B | LYS29 |
| B | ASN425 |
| site_id | DC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 613 |
| Chain | Residue |
| A | GLU338 |
| A | ASN353 |
| A | GOL616 |
| B | VAL327 |
| B | ARG329 |
| B | LYS360 |
| B | HOH764 |
| site_id | DC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 614 |
| Chain | Residue |
| B | PRO82 |
| B | GLN83 |
| B | HOH750 |
| site_id | DC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE GOL B 615 |
| Chain | Residue |
| B | ARG248 |
| site_id | DC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 616 |
| Chain | Residue |
| B | ASP401 |
| B | TRP405 |
| C | ASN237 |
| site_id | DC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL B 617 |
| Chain | Residue |
| B | GLN104 |
| B | LEU268 |
| B | SER269 |
| B | PRO270 |
| site_id | EC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 618 |
| Chain | Residue |
| A | VAL327 |
| A | LYS360 |
| A | GOL616 |
| B | GLU338 |
| B | ASN353 |
| B | LEU354 |
| B | GLU355 |
| site_id | EC2 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE RBV C 601 |
| Chain | Residue |
| C | LYS169 |
| C | LEU186 |
| C | LEU187 |
| C | ASP250 |
| C | LEU301 |
| C | SER303 |
| C | THR308 |
| C | THR309 |
| C | ASN312 |
| C | TYR344 |
| C | GLY345 |
| C | ASP346 |
| site_id | EC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 C 602 |
| Chain | Residue |
| C | HIS149 |
| C | ASN152 |
| site_id | EC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 603 |
| Chain | Residue |
| C | THR247 |
| C | ARG248 |
| C | HOH723 |
| site_id | EC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG C 604 |
| Chain | Residue |
| C | ASP243 |
| C | ASP347 |
| C | GLU348 |
| C | SER392 |
| C | HOH767 |
| site_id | EC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 C 605 |
| Chain | Residue |
| C | ARG408 |
| C | HOH770 |
| site_id | EC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL C 606 |
| Chain | Residue |
| C | GLN389 |
| C | GLY400 |
| C | ASP401 |
| C | GOL616 |
| site_id | EC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 607 |
| Chain | Residue |
| B | ALA236 |
| C | ALA236 |
| C | ASN237 |
| site_id | EC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 C 608 |
| Chain | Residue |
| C | LYS158 |
| C | SER159 |
| C | HOH766 |
| C | HOH805 |
| site_id | FC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 C 609 |
| Chain | Residue |
| C | GLY51 |
| C | SER52 |
| C | SER61 |
| C | LEU62 |
| C | GLN63 |
| site_id | FC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 C 610 |
| Chain | Residue |
| C | TRP134 |
| C | GLY136 |
| site_id | FC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE SO4 C 611 |
| Chain | Residue |
| C | ARG248 |
| site_id | FC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 C 612 |
| Chain | Residue |
| C | VAL359 |
| C | ARG366 |
| C | GLY380 |
| C | PRO381 |
| site_id | FC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 C 613 |
| Chain | Residue |
| C | ARG374 |
| C | ALA375 |
| C | LEU382 |
| C | GLU383 |
| C | HOH774 |
| C | HOH818 |
| site_id | FC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 614 |
| Chain | Residue |
| C | TYR240 |
| C | ARG384 |
| C | GLN386 |
| site_id | FC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 615 |
| Chain | Residue |
| C | ASP410 |
| C | ARG411 |
| C | HIS453 |
| site_id | FC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL C 616 |
| Chain | Residue |
| B | ASN237 |
| C | ALA236 |
| C | PHE238 |
| C | HIS241 |
| C | THR387 |
| C | LEU388 |
| C | GLN389 |
| C | TRP405 |
| C | GOL606 |
| site_id | FC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL C 617 |
| Chain | Residue |
| B | GLN64 |
| B | ARG67 |
| C | THR11 |
| site_id | GC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL C 618 |
| Chain | Residue |
| C | SER223 |
| C | MET224 |
| C | ASN225 |
| site_id | GC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL C 619 |
| Chain | Residue |
| C | SER27 |
| C | THR28 |
| C | LYS29 |
| C | ASN425 |
| site_id | GC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL C 620 |
| Chain | Residue |
| C | GLN146 |
| C | HIS149 |
| C | ALA150 |
| C | ASP191 |
| C | GLY193 |
| C | HOH758 |
| C | HOH855 |
| site_id | GC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL C 621 |
| Chain | Residue |
| C | ARG96 |
| C | PRO217 |
| C | MET336 |
| C | SER339 |
| C | GLU340 |
| C | PHE341 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:21471315, ECO:0000269|PubMed:22341781, ECO:0000269|PubMed:24622391 |
| Chain | Residue | Details |
| A | ASP243 | |
| A | GLU348 | |
| B | ASP243 | |
| B | GLU348 | |
| C | ASP243 | |
| C | GLU348 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 3 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:21471315 |
| Chain | Residue | Details |
| A | ASP245 | |
| B | ASP245 | |
| C | ASP245 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 3 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:21471315, ECO:0000269|PubMed:24622391 |
| Chain | Residue | Details |
| A | ASP347 | |
| B | ASP347 | |
| C | ASP347 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 3 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:22341781, ECO:0000269|PubMed:24622391 |
| Chain | Residue | Details |
| A | SER392 | |
| B | SER392 | |
| C | SER392 |
