3SFG
crystal structure of murine norovirus RNA dependent RNA polymerase in complex with 2thiouridine(2TU)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
A | 0004386 | molecular_function | helicase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0006351 | biological_process | DNA-templated transcription |
A | 0039694 | biological_process | viral RNA genome replication |
B | 0003723 | molecular_function | RNA binding |
B | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
B | 0004386 | molecular_function | helicase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0006351 | biological_process | DNA-templated transcription |
B | 0039694 | biological_process | viral RNA genome replication |
C | 0003723 | molecular_function | RNA binding |
C | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
C | 0004386 | molecular_function | helicase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0006351 | biological_process | DNA-templated transcription |
C | 0039694 | biological_process | viral RNA genome replication |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE 2TU A 601 |
Chain | Residue |
A | ASP250 |
A | LEU301 |
A | SER303 |
A | THR308 |
A | THR309 |
A | ASN312 |
A | TYR344 |
A | ASP346 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 602 |
Chain | Residue |
A | THR247 |
A | ARG248 |
A | TYR246 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 603 |
Chain | Residue |
A | THR148 |
A | HIS149 |
A | ASN152 |
A | HOH745 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 A 604 |
Chain | Residue |
A | TRP134 |
A | GLY136 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 605 |
Chain | Residue |
A | ARG374 |
A | GLU383 |
A | ARG385 |
site_id | AC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 A 606 |
Chain | Residue |
A | PRO103 |
A | ARG486 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 607 |
Chain | Residue |
A | PRO82 |
A | GLN83 |
A | GLU84 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 608 |
Chain | Residue |
A | CYS90 |
A | ASP91 |
A | GLU94 |
A | ARG260 |
A | ILE264 |
A | HOH718 |
A | HOH817 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 609 |
Chain | Residue |
A | MET31 |
A | LEU168 |
A | LYS169 |
A | ASP170 |
A | LEU187 |
site_id | BC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 A 610 |
Chain | Residue |
A | ASP410 |
A | ARG411 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 611 |
Chain | Residue |
A | SER27 |
A | THR28 |
A | LYS29 |
A | ASN425 |
A | HOH878 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 612 |
Chain | Residue |
A | ASP117 |
A | THR120 |
A | SER121 |
A | LYS130 |
A | MET195 |
A | HOH734 |
site_id | BC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL A 613 |
Chain | Residue |
A | LEU5 |
A | SER9 |
A | GLY10 |
A | THR11 |
A | THR11 |
A | TYR12 |
A | ALA13 |
A | ARG67 |
A | HOH876 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL A 614 |
Chain | Residue |
A | SER223 |
A | MET224 |
A | ASN225 |
site_id | BC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 615 |
Chain | Residue |
A | THR28 |
A | GLY51 |
A | SER52 |
A | PRO60 |
A | SER61 |
A | LEU62 |
A | HOH897 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 616 |
Chain | Residue |
A | LYS158 |
A | SER159 |
A | HOH850 |
A | HOH910 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 617 |
Chain | Residue |
A | PHE109 |
A | CYS113 |
A | SER137 |
A | ALA138 |
A | PHE139 |
site_id | BC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 618 |
Chain | Residue |
A | ARG234 |
A | ASN237 |
A | GLU340 |
A | ASP401 |
A | GLN402 |
A | GLY404 |
A | HOH896 |
site_id | CC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 619 |
Chain | Residue |
A | PRO24 |
A | SER121 |
A | GLY123 |
A | HIS127 |
A | THR165 |
site_id | CC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 620 |
Chain | Residue |
A | LYS29 |
A | ASN425 |
A | HIS426 |
A | GLN427 |
C | LYS158 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 621 |
Chain | Residue |
A | TYR293 |
A | ARG7 |
A | SER9 |
A | ALA18 |
A | TYR20 |
site_id | CC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL A 622 |
Chain | Residue |
A | ARG384 |
A | GLN386 |
site_id | CC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 623 |
Chain | Residue |
A | ASP243 |
A | ASP347 |
A | GLU348 |
A | SER392 |
A | HOH756 |
site_id | CC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE 2TU B 601 |
Chain | Residue |
B | THR309 |
B | ASN312 |
B | TYR344 |
B | GLY345 |
B | ASP346 |
B | HOH821 |
site_id | CC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 B 602 |
Chain | Residue |
B | HIS149 |
B | ASN152 |
site_id | CC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 B 603 |
Chain | Residue |
B | GLN83 |
B | HOH763 |
site_id | CC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 B 604 |
Chain | Residue |
A | ILE334 |
B | ARG329 |
site_id | DC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 605 |
Chain | Residue |
B | ASP410 |
B | ARG411 |
B | HIS453 |
B | HOH867 |
site_id | DC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 606 |
Chain | Residue |
A | LYS158 |
B | LYS29 |
B | HIS426 |
B | GLN427 |
B | GLU431 |
site_id | DC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 B 607 |
Chain | Residue |
B | CYS90 |
B | ASP91 |
B | GLU94 |
B | ARG260 |
B | ASP263 |
B | ILE264 |
B | ARG267 |
site_id | DC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 608 |
Chain | Residue |
B | SER223 |
B | MET224 |
B | ASN225 |
site_id | DC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 609 |
Chain | Residue |
B | ARG385 |
B | GLN386 |
B | THR387 |
site_id | DC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL B 610 |
Chain | Residue |
B | ASP117 |
B | THR120 |
B | LYS130 |
B | MET195 |
site_id | DC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 611 |
Chain | Residue |
B | THR28 |
B | SER52 |
B | SER61 |
B | LEU62 |
B | GLN63 |
B | HOH833 |
site_id | DC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL B 612 |
Chain | Residue |
B | GLY157 |
B | LYS158 |
B | SER159 |
site_id | DC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B 613 |
Chain | Residue |
B | PHE109 |
B | LYS110 |
B | CYS113 |
B | ALA138 |
B | PHE139 |
site_id | EC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 614 |
Chain | Residue |
B | SER121 |
B | GLY123 |
B | HIS127 |
B | THR165 |
B | GLY189 |
B | SER190 |
site_id | EC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 615 |
Chain | Residue |
B | ASN237 |
B | PHE238 |
B | ARG239 |
C | ALA236 |
C | ASN237 |
C | PHE238 |
site_id | EC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 616 |
Chain | Residue |
B | THR108 |
B | PHE109 |
B | LYS110 |
B | ASN151 |
B | GLU155 |
B | ARG200 |
site_id | EC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 617 |
Chain | Residue |
B | ASP243 |
B | ASP245 |
B | ASP346 |
B | ASP347 |
B | GLU348 |
B | HOH865 |
site_id | EC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE 2TU C 601 |
Chain | Residue |
C | ASP250 |
C | SER303 |
C | THR308 |
C | THR309 |
C | ASN312 |
C | GLY345 |
C | ASP346 |
C | HOH846 |
site_id | EC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 602 |
Chain | Residue |
C | TYR246 |
C | THR247 |
C | ARG248 |
C | HOH721 |
site_id | EC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 C 603 |
Chain | Residue |
C | HIS149 |
C | ASN152 |
site_id | EC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 C 604 |
Chain | Residue |
C | ARG374 |
C | GLU383 |
C | ARG385 |
site_id | EC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 C 605 |
Chain | Residue |
C | GLY454 |
C | GLU455 |
C | LYS456 |
site_id | FC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 C 606 |
Chain | Residue |
C | THR11 |
C | TYR12 |
C | ALA13 |
site_id | FC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 C 607 |
Chain | Residue |
C | ASN95 |
C | ASN99 |
site_id | FC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 C 608 |
Chain | Residue |
C | TRP134 |
C | GLY136 |
site_id | FC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 C 609 |
Chain | Residue |
C | THR28 |
C | GLY51 |
C | SER52 |
C | SER61 |
C | LEU62 |
C | HOH789 |
site_id | FC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 610 |
Chain | Residue |
C | LEU168 |
C | LYS169 |
C | ASP170 |
C | LEU187 |
site_id | FC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 611 |
Chain | Residue |
B | ASN237 |
C | ASP401 |
C | TRP405 |
C | HOH793 |
site_id | FC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 612 |
Chain | Residue |
C | ASP410 |
C | ARG411 |
C | HIS453 |
C | HOH783 |
site_id | FC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL C 613 |
Chain | Residue |
C | PHE109 |
C | CYS113 |
C | ALA138 |
C | PHE139 |
site_id | FC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 614 |
Chain | Residue |
C | SER27 |
C | LYS29 |
C | ASN425 |
site_id | GC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL C 615 |
Chain | Residue |
C | GLY157 |
C | LYS158 |
C | SER159 |
C | HOH833 |
site_id | GC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 616 |
Chain | Residue |
C | ARG384 |
C | ARG385 |
C | GLN386 |
site_id | GC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 617 |
Chain | Residue |
C | CYS90 |
C | ASP91 |
C | GLU94 |
C | ARG260 |
C | ILE264 |
C | ARG267 |
site_id | GC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL C 618 |
Chain | Residue |
C | HIS426 |
C | GLN427 |
C | ASN428 |
C | GLU431 |
site_id | GC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG C 619 |
Chain | Residue |
C | ASP243 |
C | ASP347 |
C | GLU348 |
C | SER392 |
C | HOH743 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21471315, ECO:0000269|PubMed:22341781, ECO:0000269|PubMed:24622391 |
Chain | Residue | Details |
A | ASP243 | |
A | GLU348 | |
B | ASP243 | |
B | GLU348 | |
C | ASP243 | |
C | GLU348 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21471315 |
Chain | Residue | Details |
A | ASP245 | |
B | ASP245 | |
C | ASP245 |
site_id | SWS_FT_FI3 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21471315, ECO:0000269|PubMed:24622391 |
Chain | Residue | Details |
A | ASP347 | |
B | ASP347 | |
C | ASP347 |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|PubMed:22341781, ECO:0000269|PubMed:24622391 |
Chain | Residue | Details |
A | SER392 | |
B | SER392 | |
C | SER392 |