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3SEC

Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase complexed with pyrazofurin monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1000
ChainResidue
AGLU33
ATHR159
APRO161
AASN210
AALA212
AHOH274
AHOH285
AHOH326
AHOH336

site_idAC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE PFU A 2000
ChainResidue
AASP20
ALYS42
AASP70
ALYS72
AASP75
AILE76
ATHR79
ALEU123
AMET126
ASER127
APRO180
AGLN185
AGLY202
AARG203
AHOH248
AHOH256
AHOH259
AHOH266
AHOH272
AHOH277
AHOH278
AHOH286

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues24
DetailsBinding site: {}
ChainResidueDetails

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PDB entries from 2026-05-06

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