3RYW
Crystal structure of P. vivax geranylgeranyl diphosphate synthase complexed with BPH-811
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004659 | molecular_function | prenyltransferase activity |
| A | 0008299 | biological_process | isoprenoid biosynthetic process |
| A | 0016020 | cellular_component | membrane |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0004659 | molecular_function | prenyltransferase activity |
| B | 0008299 | biological_process | isoprenoid biosynthetic process |
| B | 0016020 | cellular_component | membrane |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0004659 | molecular_function | prenyltransferase activity |
| C | 0008299 | biological_process | isoprenoid biosynthetic process |
| C | 0016020 | cellular_component | membrane |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0004659 | molecular_function | prenyltransferase activity |
| D | 0008299 | biological_process | isoprenoid biosynthetic process |
| D | 0016020 | cellular_component | membrane |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE K9H A 2001 |
| Chain | Residue |
| A | PHE122 |
| A | THR244 |
| A | ASP287 |
| A | LYS301 |
| A | MG2002 |
| A | MG2003 |
| A | MG2004 |
| D | VAL153 |
| D | LEU157 |
| D | K9H2001 |
| A | ALA125 |
| A | ASP126 |
| A | ASP130 |
| A | ARG135 |
| A | VAL156 |
| A | LEU157 |
| A | GLN195 |
| A | LYS243 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG A 2002 |
| Chain | Residue |
| A | ASP287 |
| A | ASP305 |
| A | K9H2001 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG A 2003 |
| Chain | Residue |
| A | ASP126 |
| A | ASP130 |
| A | K9H2001 |
| A | MG2004 |
| A | HOH2108 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 2004 |
| Chain | Residue |
| A | ASP126 |
| A | ASP130 |
| A | GLN195 |
| A | ASP198 |
| A | K9H2001 |
| A | MG2003 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 2005 |
| Chain | Residue |
| A | GLY80 |
| A | LYS81 |
| A | ARG84 |
| A | GLN119 |
| A | ARG136 |
| site_id | AC6 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE K9H B 2001 |
| Chain | Residue |
| B | ASP126 |
| B | ASP130 |
| B | ARG135 |
| B | VAL156 |
| B | THR191 |
| B | GLN195 |
| B | LYS243 |
| B | THR244 |
| B | GLN284 |
| B | ASP287 |
| B | LYS301 |
| B | MG2002 |
| B | MG2003 |
| B | MG2004 |
| B | HOH2104 |
| B | HOH2115 |
| C | VAL153 |
| C | LEU157 |
| C | K9H2001 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG B 2002 |
| Chain | Residue |
| B | ASP287 |
| B | ASP305 |
| B | K9H2001 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG B 2003 |
| Chain | Residue |
| B | ASP126 |
| B | ASP130 |
| B | K9H2001 |
| B | MG2004 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 2004 |
| Chain | Residue |
| B | ASP126 |
| B | ASP130 |
| B | GLN195 |
| B | ASP198 |
| B | K9H2001 |
| B | MG2003 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 2005 |
| Chain | Residue |
| B | LYS81 |
| B | GLN119 |
| B | ARG136 |
| site_id | BC2 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE K9H C 2001 |
| Chain | Residue |
| B | VAL153 |
| B | ASN154 |
| B | LEU157 |
| B | K9H2001 |
| C | PHE122 |
| C | ALA125 |
| C | ASP126 |
| C | ASP130 |
| C | ARG135 |
| C | VAL156 |
| C | THR191 |
| C | GLN195 |
| C | LYS243 |
| C | THR244 |
| C | ASP287 |
| C | LYS301 |
| C | MG2002 |
| C | MG2003 |
| C | MG2004 |
| site_id | BC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG C 2002 |
| Chain | Residue |
| C | ASP287 |
| C | ASP305 |
| C | K9H2001 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG C 2003 |
| Chain | Residue |
| C | ASP126 |
| C | ASP130 |
| C | K9H2001 |
| site_id | BC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG C 2004 |
| Chain | Residue |
| C | GLN195 |
| C | ASP198 |
| C | K9H2001 |
| C | ASP126 |
| C | ASP130 |
| site_id | BC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 2005 |
| Chain | Residue |
| C | LYS81 |
| C | GLN119 |
| C | ARG136 |
| site_id | BC7 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE K9H D 2001 |
| Chain | Residue |
| A | VAL153 |
| A | LEU157 |
| A | K9H2001 |
| D | PHE122 |
| D | ALA125 |
| D | ASP126 |
| D | ASP130 |
| D | ARG135 |
| D | VAL156 |
| D | THR191 |
| D | GLN195 |
| D | LYS243 |
| D | THR244 |
| D | ASP287 |
| D | LYS301 |
| D | MG2002 |
| D | MG2003 |
| D | MG2004 |
| D | HOH2118 |
| site_id | BC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MG D 2002 |
| Chain | Residue |
| D | ASP287 |
| D | K9H2001 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG D 2003 |
| Chain | Residue |
| D | ASP126 |
| D | ASP130 |
| D | K9H2001 |
| site_id | CC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG D 2004 |
| Chain | Residue |
| D | ASP126 |
| D | ASP130 |
| D | GLN195 |
| D | ASP198 |
| D | K9H2001 |
| site_id | CC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 D 2005 |
| Chain | Residue |
| D | LYS81 |
| D | ARG84 |
| D | GLN119 |
| D | ARG136 |
Functional Information from PROSITE/UniProt
| site_id | PS00444 |
| Number of Residues | 13 |
| Details | POLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGeyFQIhDDYlD |
| Chain | Residue | Details |
| A | MET279-ASP291 |
