3R5B
Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0008666 | molecular_function | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity |
| A | 0009089 | biological_process | obsolete L-lysine biosynthetic process via diaminopimelate |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0008666 | molecular_function | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity |
| B | 0009089 | biological_process | obsolete L-lysine biosynthetic process via diaminopimelate |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0008666 | molecular_function | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity |
| C | 0009089 | biological_process | obsolete L-lysine biosynthetic process via diaminopimelate |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0008666 | molecular_function | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity |
| D | 0009089 | biological_process | obsolete L-lysine biosynthetic process via diaminopimelate |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0005737 | cellular_component | cytoplasm |
| E | 0008666 | molecular_function | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity |
| E | 0009089 | biological_process | obsolete L-lysine biosynthetic process via diaminopimelate |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0005737 | cellular_component | cytoplasm |
| F | 0008666 | molecular_function | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity |
| F | 0009089 | biological_process | obsolete L-lysine biosynthetic process via diaminopimelate |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE NPI A 381 |
| Chain | Residue |
| A | PHE129 |
| C | MET203 |
| C | MET219 |
| C | GLU221 |
| A | PHE170 |
| A | ARG191 |
| A | ASN209 |
| A | SER225 |
| A | ALA226 |
| A | GLY244 |
| A | LEU246 |
| C | ARG183 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NPI C 381 |
| Chain | Residue |
| B | ARG183 |
| B | GLU221 |
| C | PHE129 |
| C | ARG191 |
| C | SER225 |
| C | GLY244 |
| C | HOH369 |
| site_id | AC3 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE NPI D 381 |
| Chain | Residue |
| D | PHE129 |
| D | ARG191 |
| D | ASN209 |
| D | SER225 |
| D | ALA226 |
| D | GLY244 |
| F | ARG183 |
| F | MET203 |
| F | MET219 |
| F | GLU221 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NPI E 381 |
| Chain | Residue |
| D | ARG183 |
| D | MET203 |
| D | MET219 |
| E | ASN209 |
| E | SER225 |
| E | ALA226 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NPI E 345 |
| Chain | Residue |
| E | ARG183 |
| E | MET203 |
| E | MET219 |
| E | HOH385 |
| F | ARG191 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | Active site: {"description":"Acyl-anhydride intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_02122","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_02122","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 63 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"22359568","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
