3QQC
Crystal structure of archaeal Spt4/5 bound to the RNAP clamp domain
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003899 | molecular_function | DNA-directed 5'-3' RNA polymerase activity |
| A | 0006351 | biological_process | DNA-templated transcription |
| D | 0003729 | molecular_function | mRNA binding |
| D | 0003735 | molecular_function | structural constituent of ribosome |
| D | 0003746 | molecular_function | translation elongation factor activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0005840 | cellular_component | ribosome |
| D | 0006354 | biological_process | DNA-templated transcription elongation |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| D | 0006368 | biological_process | transcription elongation by RNA polymerase II |
| D | 0006412 | biological_process | translation |
| D | 0006414 | biological_process | translational elongation |
| D | 0032784 | biological_process | regulation of DNA-templated transcription elongation |
| D | 0140673 | biological_process | transcription elongation-coupled chromatin remodeling |
| E | 0005515 | molecular_function | protein binding |
| E | 0006355 | biological_process | regulation of DNA-templated transcription |
| E | 0008270 | molecular_function | zinc ion binding |
| E | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 2000 |
| Chain | Residue |
| A | CYS161 |
| A | CYS164 |
| A | CYS208 |
| A | PRO209 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 2001 |
| Chain | Residue |
| A | CYS121 |
| A | CYS124 |
| A | CYS131 |
| A | HIS134 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 2002 |
| Chain | Residue |
| A | CYS11 |
| A | CYS26 |
| A | CYS29 |
| A | CYS8 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN E 100 |
| Chain | Residue |
| E | CYS6 |
| E | CYS9 |
| E | CYS18 |
| E | CYS21 |
Functional Information from PROSITE/UniProt
| site_id | PS01108 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. GDlVeVIaGpfKGqk.AkV |
| Chain | Residue | Details |
| D | GLY95-VAL112 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00949, ECO:0000269|PubMed:21187417, ECO:0000269|PubMed:21386817 |
| Chain | Residue | Details |
| E | CYS6 | |
| E | CYS9 | |
| E | CYS18 | |
| E | CYS21 |
