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3QLH

HIV-1 Reverse Transcriptase in Complex with Manicol at the RNase H Active Site and TMC278 (Rilpivirine) at the NNRTI Binding Pocket

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003964molecular_functionRNA-directed DNA polymerase activity
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
A0006278biological_processRNA-templated DNA biosynthetic process
B0003964molecular_functionRNA-directed DNA polymerase activity
B0006278biological_processRNA-templated DNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MNK A 1001
ChainResidue
AASP443
AASP498
AHIS539
AASP549
AMN556
AMN557

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE T27 A 555
ChainResidue
ALYS103
AVAL179
ATYR181
ATYR188
APHE227
ATRP229
ALEU234
AHIS235
APRO236
ATYR318
APRO95
ALEU100
ALYS101

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN A 556
ChainResidue
AASP443
AASP549
AMN557
AMNK1001

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 557
ChainResidue
AASP443
AGLU478
AASP498
AMN556
AMNK1001

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE DMS B 1001
ChainResidue
BTYR354
BARG356
BARG358
BALA371
BLYS374

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 429
ChainResidue
BGLU399
BTRP402

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues190
DetailsDomain: {"description":"Reverse transcriptase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00405","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues16
DetailsRegion: {"description":"RT 'primer grip'"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues32
DetailsMotif: {"description":"Tryptophan repeat motif"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues4
DetailsSite: {"description":"Essential for RT p66/p51 heterodimerization"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsSite: {"description":"Cleavage; by viral protease; partial"}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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