3QHD
Crystal structure of 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE Synthase from BURKHOLDERIA PSEUDOMALLEI bound to CYTIDINE, FOL795 and FOL955
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008299 | biological_process | isoprenoid biosynthetic process |
| A | 0008685 | molecular_function | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity |
| A | 0016114 | biological_process | terpenoid biosynthetic process |
| A | 0016829 | molecular_function | lyase activity |
| A | 0019288 | biological_process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0008299 | biological_process | isoprenoid biosynthetic process |
| B | 0008685 | molecular_function | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity |
| B | 0016114 | biological_process | terpenoid biosynthetic process |
| B | 0016829 | molecular_function | lyase activity |
| B | 0019288 | biological_process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0008299 | biological_process | isoprenoid biosynthetic process |
| C | 0008685 | molecular_function | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity |
| C | 0016114 | biological_process | terpenoid biosynthetic process |
| C | 0016829 | molecular_function | lyase activity |
| C | 0019288 | biological_process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway |
| C | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 163 |
| Chain | Residue |
| A | ASP10 |
| A | HIS12 |
| A | HIS44 |
| A | MSR166 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 164 |
| Chain | Residue |
| A | HIS12 |
| A | HIS36 |
| A | SER37 |
| A | HIS44 |
| A | HOH210 |
| site_id | AC3 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE CTN A 165 |
| Chain | Residue |
| A | ALA102 |
| A | PRO105 |
| A | LYS106 |
| A | LEU107 |
| A | ALA108 |
| A | ALA133 |
| A | LYS134 |
| A | HOH169 |
| A | HOH211 |
| A | HOH220 |
| A | HOH248 |
| A | HOH297 |
| C | ASP58 |
| C | GLY60 |
| C | ARG61 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE MSR A 166 |
| Chain | Residue |
| A | ASP10 |
| A | HIS12 |
| A | HIS44 |
| A | PHE63 |
| A | SER64 |
| A | ASP65 |
| A | PHE70 |
| A | ZN163 |
| B | LYS134 |
| B | CTN165 |
| B | HOH169 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE 795 A 167 |
| Chain | Residue |
| A | HIS62 |
| A | PHE63 |
| A | ASP67 |
| A | ARG69 |
| A | ALA77 |
| A | LEU78 |
| A | ARG85 |
| A | HOH327 |
| B | ALA113 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE K B 163 |
| Chain | Residue |
| A | HOH377 |
| B | HOH378 |
| C | HOH379 |
| C | HOH380 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN B 164 |
| Chain | Residue |
| B | ASP10 |
| B | HIS12 |
| B | HIS44 |
| C | HOH168 |
| site_id | AC8 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE CTN B 165 |
| Chain | Residue |
| A | ASP58 |
| A | GLY60 |
| A | MSR166 |
| B | ALA102 |
| B | PRO105 |
| B | LYS106 |
| B | LEU107 |
| B | ALA108 |
| B | ALA133 |
| B | LYS134 |
| B | THR135 |
| B | HOH175 |
| B | HOH176 |
| B | HOH230 |
| B | HOH307 |
| B | HOH320 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN C 163 |
| Chain | Residue |
| A | HOH364 |
| C | ASP10 |
| C | HIS12 |
| C | HIS44 |
| site_id | BC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE CTN C 165 |
| Chain | Residue |
| B | ASP58 |
| B | GLY60 |
| B | ARG61 |
| C | ALA102 |
| C | PRO105 |
| C | LYS106 |
| C | LEU107 |
| C | ALA108 |
| C | ALA133 |
| C | LYS134 |
| C | HOH297 |
| C | HOH332 |
Functional Information from PROSITE/UniProt
| site_id | PS01350 |
| Number of Residues | 16 |
| Details | ISPF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. SDADVLlHAitDAlfG |
| Chain | Residue | Details |
| A | SER37-GLY52 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 35 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00107","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 54 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | Site: {"description":"Transition state stabilizer","evidences":[{"source":"HAMAP-Rule","id":"MF_00107","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
