3Q3Z

Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP

Functional Information from PDB Data

site_id	1
Number of Residues
Details

Chain

Residue

---

site_id	AC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE C2E V 1

Chain	Residue
V	A13
V	HOH110
V	HOH116
V	A14
V	A61
V	A69
V	A70
V	C71
V	G73
V	A74
V	MG86

---

site_id	AC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG V 82

Chain	Residue
V	G38
V	U55
V	G56
V	HOH88
V	HOH90
V	HOH93
V	HOH94

---

site_id	AC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG V 4

Chain	Residue
V	U60
V	A61
V	G62
V	U63
V	HOH97
V	HOH98
V	HOH99

---

site_id	AC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG V 5

Chain	Residue
V	HOH100
V	HOH104
V	HOH107
V	HOH108
V	HOH109
V	HOH110

---

site_id	AC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG V 83

Chain	Residue
V	U60
V	U66
V	HOH171
V	HOH172
V	HOH173
V	HOH174

---

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE C2E V 84

Chain	Residue
A	C2E84
V	A18
V	C75
V	C76
V	G77
V	HOH121

---

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG V 85

Chain	Residue
A	A34
A	HOH160
A	HOH161
V	G46
V	HOH175
V	HOH176

---

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG V 86

Chain	Residue
V	C2E1
V	A61
V	G67
V	HOH126
V	HOH139
V	HOH156

---

site_id	AC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG V 87

Chain	Residue
A	G46
A	HOH169
V	A33
V	A34
V	HOH178
V	HOH179
V	HOH180

---

site_id	BC1
Number of Residues	14
Details	BINDING SITE FOR RESIDUE C2E A 2

Chain	Residue
A	A13
A	A14
A	A61
A	A69
A	A70
A	C71
A	G73
A	A74
A	HOH100
A	HOH116
A	HOH128
A	HOH148
A	HOH152
A	HOH156

---

site_id	BC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 82

Chain	Residue
A	A61
A	G62
A	U63
A	HOH87
A	HOH89
A	HOH90

---

site_id	BC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG A 3

Chain	Residue
A	G38
A	U55
A	G56
A	HOH91
A	HOH92
A	HOH94
A	HOH132

---

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 6

Chain	Residue
A	U60
A	U66
A	HOH95
A	HOH96
A	HOH101
A	HOH102

---

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 83

Chain	Residue
A	HOH115
A	HOH116
A	HOH103
A	HOH105
A	HOH106
A	HOH113

---

site_id	BC6
Number of Residues	10
Details	BINDING SITE FOR RESIDUE C2E A 84

Chain	Residue
A	A17
A	A18
A	HOH129
A	HOH138
A	HOH158
V	C75
V	C76
V	C2E84
V	HOH121
V	HOH135

---

site_id	BC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 85

Chain	Residue
A	A34
A	HOH162
A	HOH163
A	HOH164
A	HOH165
V	HOH177

---

site_id	BC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG A 86

Chain	Residue
A	A61
A	G62
A	U66
A	G67
A	HOH166
A	HOH168
A	HOH170

---