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3Q23

X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II

Functional Information from PDB Data
site_idAC1
Number of Residues27
DetailsBINDING SITE FOR RESIDUE G2P A 1108
ChainResidue
AARG424
AARG666
ALYS670
AASN671
ATYR678
AASP951
AMN1107
AMN1109
AG2P1111
AHOH1128
AHOH1221
AASP559
AHOH1239
AHOH1455
AHOH1569
AHOH1615
AHOH1644
AHOH1866
CDC4
CDC5
AGLY560
AVAL561
ATHR562
AASN563
AGLY564
APRO565
ATYR612

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 1107
ChainResidue
AASP559
AASP951
AG2P1108
AMN1109
AG2P1111
AHOH2284

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 1109
ChainResidue
AASP559
AGLY560
AASP951
AMN1107
AG2P1108

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 2HP A 1110
ChainResidue
AGLN469
AILE473
ALYS474
AVAL475
AHIS476
AHOH1220
AHOH1415
AHOH1603
AHOH2042

site_idAC5
Number of Residues26
DetailsBINDING SITE FOR RESIDUE G2P A 1111
ChainResidue
AARG424
ALYS437
AGLU557
AASP559
AILE925
APHE950
AASP951
AMN1107
AG2P1108
AHOH1221
AHOH1615
AHOH2102
AHOH2272
AHOH2284
AHOH2285
AHOH2286
AHOH2287
AHOH2288
AHOH2289
AHOH2291
AHOH2295
AHOH2296
AHOH2297
AHOH2298
CDC5
CDA6

site_idAC6
Number of Residues24
DetailsBINDING SITE FOR RESIDUE G2P B 1108
ChainResidue
BARG424
BLYS437
BGLU557
BASP559
BILE925
BPHE950
BASP951
BMN1107
BG2P1109
BHOH1719
BHOH1767
BHOH1863
BHOH1968
BHOH2106
BHOH2239
BHOH2341
BHOH2460
BHOH2608
BHOH2720
BHOH2767
BHOH2780
BHOH2849
DDC5
DDA6

site_idAC7
Number of Residues28
DetailsBINDING SITE FOR RESIDUE G2P B 1109
ChainResidue
BGLY560
BVAL561
BTHR562
BASN563
BGLY564
BPRO565
BTYR612
BARG666
BLYS670
BASN671
BTYR678
BASP951
BMN1107
BG2P1108
BMN1110
BHOH1775
BHOH1803
BHOH1968
BHOH1994
BHOH2106
BHOH2114
BHOH2332
BHOH2411
BHOH2767
DDC4
DDC5
BARG424
BASP559

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 1107
ChainResidue
BASP559
BASP951
BG2P1108
BG2P1109
BMN1110
BHOH1767

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 1110
ChainResidue
BASP559
BGLY560
BASP951
BMN1107
BG2P1109

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE 2HP B 1111
ChainResidue
BGLN469
BILE473
BLYS474
BVAL475
BHIS476
BHOH1857
BHOH2400

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:21321236, ECO:0000269|PubMed:23235152
ChainResidueDetails
ALYS437
AASP559
ALYS670
AASP951
BLYS437
BASP559
BLYS670
BASP951

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PDB entries from 2024-04-24

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