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3PSN

Crystal structure of mouse VPS29 complexed with Mn2+

Replaces:  3LH7
Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005768cellular_componentendosome
A0005829cellular_componentcytosol
A0006896biological_processGolgi to vacuole transport
A0010008cellular_componentendosome membrane
A0015031biological_processprotein transport
A0016020cellular_componentmembrane
A0030904cellular_componentretromer complex
A0030906cellular_componentretromer, cargo-selective complex
A0032456biological_processendocytic recycling
A0042147biological_processretrograde transport, endosome to Golgi
A0043231cellular_componentintracellular membrane-bounded organelle
A0046872molecular_functionmetal ion binding
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005768cellular_componentendosome
B0005829cellular_componentcytosol
B0006896biological_processGolgi to vacuole transport
B0010008cellular_componentendosome membrane
B0015031biological_processprotein transport
B0016020cellular_componentmembrane
B0030904cellular_componentretromer complex
B0030906cellular_componentretromer, cargo-selective complex
B0032456biological_processendocytic recycling
B0042147biological_processretrograde transport, endosome to Golgi
B0043231cellular_componentintracellular membrane-bounded organelle
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 601
ChainResidue
AASP8
AHIS10
AASN39
AHIS117
AHOH183
AMN602

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 602
ChainResidue
AHIS115
AHOH183
AMN601
AASN39
AASP62
AHIS86

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN A 603
ChainResidue
AGLU123
ALYS180

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 701
ChainResidue
BASP8
BHIS10
BASN39
BHIS117
BHOH183
BMN702

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 702
ChainResidue
BASN39
BASP62
BHIS86
BHIS115
BHOH183
BMN701

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN B 703
ChainResidue
BGLU123
BLYS180

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP8
BASN39
BASP62
BHIS86
BHIS115
BHIS117
AHIS10
AASN39
AASP62
AHIS86
AHIS115
AHIS117
BASP8
BHIS10

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9UBQ0
ChainResidueDetails
ALYS50
BLYS50

226707

PDB entries from 2024-10-30

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