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3PO4

Structure of a mutant of the large fragment of DNA polymerase I from Thermus aquaticus in complex with a blunt-ended DNA and ddATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1
ChainResidue
AHOH19
ADDS835
AHOH842
AHOH851
AHOH1021

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 833
ChainResidue
ASER739
AHOH958
AHOH278
AGLU507
AVAL737
ALYS738

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 834
ChainResidue
AHOH92
AHOH141
ATRP428
AHOH972

site_idAC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE DDS A 835
ChainResidue
AMG1
AHOH19
AHOH249
AHOH250
AARG587
AGLN613
AHIS639
AARG659
ALYS663
APHE667
ATYR671
AASP785
AHOH842
AHOH851
AHOH1009
AHOH1021
BHOH81
B2DA112

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1
ChainResidue
BHOH501
BHOH502
BHOH503
BHOH504
BHOH505
CHOH543

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 113
ChainResidue
AHOH1007
AHOH1008
AHOH1009
B2DA112
BHOH531
BHOH538

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

237735

PDB entries from 2025-06-18

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