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3PN6

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) G41M mutant

Functional Information from GO Data
ChainGOidnamespacecontents
A0042586molecular_functionpeptide deformylase activity
B0042586molecular_functionpeptide deformylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 201
ChainResidue
AGLN48
ACYS91
AHIS133
AHIS137
AHOH472

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 202
ChainResidue
AASP40
AGLU63
BLYS38

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 203
ChainResidue
AGLU179
AHOH479
BGLU158
AGLU160

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 204
ChainResidue
AASP30
AASP34
AZN205
AHOH484
BGLU69

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 205
ChainResidue
AASP34
AZN204
AHOH484
BASP34
BZN202
BHOH487

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 201
ChainResidue
BGLN48
BCYS91
BHIS133
BHIS137
BHOH482

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 202
ChainResidue
AGLU69
AZN205
BASP30
BASP34
BHOH487

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues30
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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