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3OPY

Crystal structure of Pichia pastoris phosphofructokinase in the T-state

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003824molecular_functioncatalytic activity
A0003872molecular_function6-phosphofructokinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005945cellular_component6-phosphofructokinase complex
A0006002biological_processfructose 6-phosphate metabolic process
A0006096biological_processglycolytic process
A0016208molecular_functionAMP binding
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0030388biological_processfructose 1,6-bisphosphate metabolic process
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0048029molecular_functionmonosaccharide binding
A0055082biological_processintracellular chemical homeostasis
A0061621biological_processcanonical glycolysis
A0070095molecular_functionfructose-6-phosphate binding
B0000166molecular_functionnucleotide binding
B0003824molecular_functioncatalytic activity
B0003872molecular_function6-phosphofructokinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005945cellular_component6-phosphofructokinase complex
B0006002biological_processfructose 6-phosphate metabolic process
B0006096biological_processglycolytic process
B0016208molecular_functionAMP binding
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
B0030388biological_processfructose 1,6-bisphosphate metabolic process
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
B0048029molecular_functionmonosaccharide binding
B0055082biological_processintracellular chemical homeostasis
B0061621biological_processcanonical glycolysis
B0070095molecular_functionfructose-6-phosphate binding
C0000166molecular_functionnucleotide binding
C0003824molecular_functioncatalytic activity
C0003872molecular_function6-phosphofructokinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005945cellular_component6-phosphofructokinase complex
C0006002biological_processfructose 6-phosphate metabolic process
C0006096biological_processglycolytic process
C0016208molecular_functionAMP binding
C0016301molecular_functionkinase activity
C0016740molecular_functiontransferase activity
C0030388biological_processfructose 1,6-bisphosphate metabolic process
C0042802molecular_functionidentical protein binding
C0046872molecular_functionmetal ion binding
C0048029molecular_functionmonosaccharide binding
C0055082biological_processintracellular chemical homeostasis
C0061621biological_processcanonical glycolysis
C0070095molecular_functionfructose-6-phosphate binding
D0000166molecular_functionnucleotide binding
D0003824molecular_functioncatalytic activity
D0003872molecular_function6-phosphofructokinase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005945cellular_component6-phosphofructokinase complex
D0006002biological_processfructose 6-phosphate metabolic process
D0006096biological_processglycolytic process
D0016208molecular_functionAMP binding
D0016301molecular_functionkinase activity
D0016740molecular_functiontransferase activity
D0030388biological_processfructose 1,6-bisphosphate metabolic process
D0042802molecular_functionidentical protein binding
D0046872molecular_functionmetal ion binding
D0048029molecular_functionmonosaccharide binding
D0055082biological_processintracellular chemical homeostasis
D0061621biological_processcanonical glycolysis
D0070095molecular_functionfructose-6-phosphate binding
E0000166molecular_functionnucleotide binding
E0003824molecular_functioncatalytic activity
E0003872molecular_function6-phosphofructokinase activity
E0005524molecular_functionATP binding
E0005737cellular_componentcytoplasm
E0005739cellular_componentmitochondrion
E0005945cellular_component6-phosphofructokinase complex
E0006002biological_processfructose 6-phosphate metabolic process
E0006096biological_processglycolytic process
E0016208molecular_functionAMP binding
E0016301molecular_functionkinase activity
E0016740molecular_functiontransferase activity
E0030388biological_processfructose 1,6-bisphosphate metabolic process
E0042802molecular_functionidentical protein binding
E0046872molecular_functionmetal ion binding
E0048029molecular_functionmonosaccharide binding
E0055082biological_processintracellular chemical homeostasis
E0061621biological_processcanonical glycolysis
E0070095molecular_functionfructose-6-phosphate binding
F0000166molecular_functionnucleotide binding
F0003824molecular_functioncatalytic activity
F0003872molecular_function6-phosphofructokinase activity
F0005524molecular_functionATP binding
F0005737cellular_componentcytoplasm
F0005739cellular_componentmitochondrion
F0005945cellular_component6-phosphofructokinase complex
F0006002biological_processfructose 6-phosphate metabolic process
F0006096biological_processglycolytic process
F0016208molecular_functionAMP binding
F0016301molecular_functionkinase activity
F0016740molecular_functiontransferase activity
F0030388biological_processfructose 1,6-bisphosphate metabolic process
F0042802molecular_functionidentical protein binding
F0046872molecular_functionmetal ion binding
F0048029molecular_functionmonosaccharide binding
F0055082biological_processintracellular chemical homeostasis
F0061621biological_processcanonical glycolysis
F0070095molecular_functionfructose-6-phosphate binding
G0000166molecular_functionnucleotide binding
G0003824molecular_functioncatalytic activity
G0003872molecular_function6-phosphofructokinase activity
G0005524molecular_functionATP binding
G0005737cellular_componentcytoplasm
G0005739cellular_componentmitochondrion
G0005945cellular_component6-phosphofructokinase complex
G0006002biological_processfructose 6-phosphate metabolic process
G0006096biological_processglycolytic process
G0016208molecular_functionAMP binding
G0016301molecular_functionkinase activity
G0016740molecular_functiontransferase activity
G0030388biological_processfructose 1,6-bisphosphate metabolic process
G0042802molecular_functionidentical protein binding
G0046872molecular_functionmetal ion binding
G0048029molecular_functionmonosaccharide binding
G0055082biological_processintracellular chemical homeostasis
G0061621biological_processcanonical glycolysis
G0070095molecular_functionfructose-6-phosphate binding
H0000166molecular_functionnucleotide binding
H0003824molecular_functioncatalytic activity
H0003872molecular_function6-phosphofructokinase activity
H0005524molecular_functionATP binding
H0005737cellular_componentcytoplasm
H0005739cellular_componentmitochondrion
H0005945cellular_component6-phosphofructokinase complex
H0006002biological_processfructose 6-phosphate metabolic process
H0006096biological_processglycolytic process
H0016208molecular_functionAMP binding
H0016301molecular_functionkinase activity
H0016740molecular_functiontransferase activity
H0030388biological_processfructose 1,6-bisphosphate metabolic process
H0042802molecular_functionidentical protein binding
H0046872molecular_functionmetal ion binding
H0048029molecular_functionmonosaccharide binding
H0055082biological_processintracellular chemical homeostasis
H0061621biological_processcanonical glycolysis
H0070095molecular_functionfructose-6-phosphate binding
I0005737cellular_componentcytoplasm
I0006096biological_processglycolytic process
J0005737cellular_componentcytoplasm
J0006096biological_processglycolytic process
K0005737cellular_componentcytoplasm
K0006096biological_processglycolytic process
L0005737cellular_componentcytoplasm
L0006096biological_processglycolytic process
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ATP F 942
ChainResidue
FASP393
FILE414
FPHE553
FILE554
FASN557
FSER558
FTYR394
FILE395
FLYS400
FALA402
FSER403
FSER404
FARG405
FGLN410

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP D 942
ChainResidue
DASP393
DTYR394
DILE395
DLYS400
DSER403
DSER404
DARG405
DGLN410
DILE414
DPHE553
DILE554
DASN557
DSER558

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP B 942
ChainResidue
BASP393
BTYR394
BILE395
BLYS400
BSER403
BSER404
BARG405
BGLN410
BILE414
BPHE553
BILE554
BASN557
BSER558

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP H 942
ChainResidue
HASP393
HTYR394
HILE395
HLYS400
HSER403
HSER404
HARG405
HGLN410
HILE414
HPHE553
HILE554
HASN557
HSER558

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 990
ChainResidue
AGLY219
AGLY220
AGLY313
AASP314
AGLY315
ASER316
ASO4991

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 991
ChainResidue
AGLY220
AGLY358
ASER359
AILE360
AASP361
AARG496
ASO4990

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 943
ChainResidue
AMET403
AHIS493
AARG496
BARG368
BARG460

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 992
ChainResidue
AARG635
ASO4993
BLYS797

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 993
ChainResidue
AARG635
ASO4992
BGLN793
BGLY794
BLYS797

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 994
ChainResidue
AALA608
AARG670
AHIS864
BARG739
BLYS832

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 995
ChainResidue
ATHR575
AARG881
ALYS885

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 990
ChainResidue
AGLY917
EARG643
EHIS644
FARG828

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 I 352
ChainResidue
IARG93
IASP250
ITHR251

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 I 353
ChainResidue
ISER129
ILYS200
IARG204

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 990
ChainResidue
CARG234
CGLY270
CLEU272
CLYS756
CARG230

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 944
ChainResidue
BARG201
BARG205
BARG241
BGLY242
BLYS730
BGLY762
BSER798

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 996
ChainResidue
AARG230
AARG234
AVAL268
AARG269
AGLY270
ALEU272
ALYS756

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 943
ChainResidue
DARG201
DARG205
DARG241
DGLY242
DLYS730
DGLY762
DSER798

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 991
ChainResidue
CSER359
CILE360
CASP361
CARG496
CSO4992

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 990
ChainResidue
GGLY358
GSER359
GILE360
GASP361
GARG496
GSO4992

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 J 352
ChainResidue
JGLY180
JPRO181
JHIS196
JLEU198

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 944
ChainResidue
CARG635
CSO4994
DGLN793
DGLY794
DLYS797

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 992
ChainResidue
CGLY219
CGLY220
CGLY313
CASP314
CGLY315
CSER316
CSO4991

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 945
ChainResidue
CMET403
CHIS493
CARG496
DARG368
DARG460

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 991
ChainResidue
GARG230
GARG234
GARG269
GGLY270
GLYS756
GGLY788

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 H 943
ChainResidue
HARG201
HARG205
HARG241
HGLY242
HLYS730
HGLY762
HSER798

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 993
ChainResidue
CALA608
CARG670
CHIS864
DARG739
DLYS832

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 F 943
ChainResidue
FARG201
FARG205
FARG241
FGLY242
FLYS730
FSER798

site_idDC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 G 992
ChainResidue
GGLY219
GGLY220
GGLY313
GASP314
GGLY315
GSER316
GSO4990

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 H 944
ChainResidue
GARG635
HGLN793
HGLY794
HLYS797

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 991
ChainResidue
EALA608
EARG670
EHIS864
FARG739
FLYS832

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 H 945
ChainResidue
GMET403
GHIS493
GARG496
HARG368
HARG460

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 K 352
ChainResidue
KARG93
KPHE249
KASP250
KTHR251

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 992
ChainResidue
ESER359
EILE360
EASP361
EARG496

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 997
ChainResidue
AARG324
ASER528

site_idDC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 J 353
ChainResidue
JSER129
JLYS200
JARG204

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 F 944
ChainResidue
EMET403
EHIS493
EARG496
FARG368
FARG460

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 998
ChainResidue
AARG670
ASER729
AASN731
AGLY774
ALYS961

site_idEC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 E 993
ChainResidue
EARG230
EARG234
EARG269
EGLY270
ELEU272
ELYS756
EGLY788

site_idEC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 K 353
ChainResidue
KSER129
KLYS200
KARG204

site_idEC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 993
ChainResidue
GARG670
GSER729
GASN731
GGLY774

site_idEC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 G 994
ChainResidue
GALA608
GARG670
GHIS864
HARG739
HLYS832

site_idEC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 994
ChainResidue
CARG635
DLYS797
DSO4944

site_idEC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 995
ChainResidue
CARG324
CPRO524
CILE526
CPRO527
CSER528

site_idEC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 F 945
ChainResidue
EARG635
FGLN793
FGLY794
FLYS797

site_idFC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 E 994
ChainResidue
EARG324
ESER528

site_idFC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 H 946
ChainResidue
GARG643
GHIS644
HASN738
HARG828

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 999
ChainResidue
AARG396
AARG487
BMET375
BHIS466
BARG469

site_idFC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1000
ChainResidue
AGLU401
ATHR471
ASER472
AGLU473
AARG490

site_idFC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1001
ChainResidue
AARG451
AARG618
AVAL655
AGLU656
AASP657
ATRP658
AHIS659

site_idFC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1002
ChainResidue
ASER857
AARG858
ATHR859

site_idFC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 996
ChainResidue
CARG396
CARG487
DMET375
DHIS466
DARG469

site_idFC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 997
ChainResidue
CGLU401
CTHR471
CSER472
CARG490

site_idFC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 998
ChainResidue
CARG451
CARG618
CVAL655
CGLU656
CASP657
CTRP658
CHIS659

site_idGC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 999
ChainResidue
CARG858
CTHR859
DHIS838

site_idGC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 995
ChainResidue
EARG396
EARG487
FMET375
FHIS466
FARG469

site_idGC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 996
ChainResidue
EGLU401
ETHR471
ESER472
EGLU473
EARG490

site_idGC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 E 997
ChainResidue
EARG451
EARG618
EVAL655
EGLU656
EASP657
ETRP658
EHIS659

site_idGC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 G 995
ChainResidue
GARG396
GARG487
HMET375
HHIS466
HARG469

site_idGC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 996
ChainResidue
GGLU401
GTHR471
GSER472
GARG490

site_idGC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 997
ChainResidue
GARG451
GGLU656
GASP657
GHIS659

site_idGC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 I 354
ChainResidue
ISER6
IARG9

site_idGC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 I 355
ChainResidue
IASN76
IASN77

site_idHC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 I 356
ChainResidue
IPRO181
IHIS196

site_idHC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 J 354
ChainResidue
JSER6
JARG9

site_idHC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 K 354
ChainResidue
KASN76
KASN77

site_idHC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 L 352
ChainResidue
LSER6
LARG9

site_idHC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 L 353
ChainResidue
LASN76
LASN77

site_idHC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 L 354
ChainResidue
LPRO181
LHIS196
LTYR230

Functional Information from PROSITE/UniProt
site_idPS00433
Number of Residues19
DetailsPHOSPHOFRUCTOKINASE Phosphofructokinase signature. RitrlGHvQRGGapcafDR
ChainResidueDetails
AARG487-ARG505
BARG460-ARG478
BLYS832-ARG850

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsRegion: {"description":"Interdomain linker","evidences":[{"source":"HAMAP-Rule","id":"MF_03184","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20833871","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_03184","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues236
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_03184","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues32
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20833871","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3OPY","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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