Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3OPY

Crystal structure of Pichia pastoris phosphofructokinase in the T-state

Functional Information from GO Data
ChainGOidnamespacecontents
A0003872molecular_function6-phosphofructokinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005945cellular_component6-phosphofructokinase complex
A0006002biological_processfructose 6-phosphate metabolic process
A0006096biological_processglycolytic process
A0016208molecular_functionAMP binding
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0030388biological_processfructose 1,6-bisphosphate metabolic process
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0048029molecular_functionmonosaccharide binding
A0061621biological_processcanonical glycolysis
A0070095molecular_functionfructose-6-phosphate binding
B0003872molecular_function6-phosphofructokinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005945cellular_component6-phosphofructokinase complex
B0006002biological_processfructose 6-phosphate metabolic process
B0006096biological_processglycolytic process
B0016208molecular_functionAMP binding
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0030388biological_processfructose 1,6-bisphosphate metabolic process
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
B0048029molecular_functionmonosaccharide binding
B0061621biological_processcanonical glycolysis
B0070095molecular_functionfructose-6-phosphate binding
C0003872molecular_function6-phosphofructokinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005945cellular_component6-phosphofructokinase complex
C0006002biological_processfructose 6-phosphate metabolic process
C0006096biological_processglycolytic process
C0016208molecular_functionAMP binding
C0016301molecular_functionkinase activity
C0016310biological_processphosphorylation
C0030388biological_processfructose 1,6-bisphosphate metabolic process
C0042802molecular_functionidentical protein binding
C0046872molecular_functionmetal ion binding
C0048029molecular_functionmonosaccharide binding
C0061621biological_processcanonical glycolysis
C0070095molecular_functionfructose-6-phosphate binding
D0003872molecular_function6-phosphofructokinase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005945cellular_component6-phosphofructokinase complex
D0006002biological_processfructose 6-phosphate metabolic process
D0006096biological_processglycolytic process
D0016208molecular_functionAMP binding
D0016301molecular_functionkinase activity
D0016310biological_processphosphorylation
D0030388biological_processfructose 1,6-bisphosphate metabolic process
D0042802molecular_functionidentical protein binding
D0046872molecular_functionmetal ion binding
D0048029molecular_functionmonosaccharide binding
D0061621biological_processcanonical glycolysis
D0070095molecular_functionfructose-6-phosphate binding
E0003872molecular_function6-phosphofructokinase activity
E0005524molecular_functionATP binding
E0005737cellular_componentcytoplasm
E0005739cellular_componentmitochondrion
E0005945cellular_component6-phosphofructokinase complex
E0006002biological_processfructose 6-phosphate metabolic process
E0006096biological_processglycolytic process
E0016208molecular_functionAMP binding
E0016301molecular_functionkinase activity
E0016310biological_processphosphorylation
E0030388biological_processfructose 1,6-bisphosphate metabolic process
E0042802molecular_functionidentical protein binding
E0046872molecular_functionmetal ion binding
E0048029molecular_functionmonosaccharide binding
E0061621biological_processcanonical glycolysis
E0070095molecular_functionfructose-6-phosphate binding
F0003872molecular_function6-phosphofructokinase activity
F0005524molecular_functionATP binding
F0005737cellular_componentcytoplasm
F0005739cellular_componentmitochondrion
F0005945cellular_component6-phosphofructokinase complex
F0006002biological_processfructose 6-phosphate metabolic process
F0006096biological_processglycolytic process
F0016208molecular_functionAMP binding
F0016301molecular_functionkinase activity
F0016310biological_processphosphorylation
F0030388biological_processfructose 1,6-bisphosphate metabolic process
F0042802molecular_functionidentical protein binding
F0046872molecular_functionmetal ion binding
F0048029molecular_functionmonosaccharide binding
F0061621biological_processcanonical glycolysis
F0070095molecular_functionfructose-6-phosphate binding
G0003872molecular_function6-phosphofructokinase activity
G0005524molecular_functionATP binding
G0005737cellular_componentcytoplasm
G0005739cellular_componentmitochondrion
G0005945cellular_component6-phosphofructokinase complex
G0006002biological_processfructose 6-phosphate metabolic process
G0006096biological_processglycolytic process
G0016208molecular_functionAMP binding
G0016301molecular_functionkinase activity
G0016310biological_processphosphorylation
G0030388biological_processfructose 1,6-bisphosphate metabolic process
G0042802molecular_functionidentical protein binding
G0046872molecular_functionmetal ion binding
G0048029molecular_functionmonosaccharide binding
G0061621biological_processcanonical glycolysis
G0070095molecular_functionfructose-6-phosphate binding
H0003872molecular_function6-phosphofructokinase activity
H0005524molecular_functionATP binding
H0005737cellular_componentcytoplasm
H0005739cellular_componentmitochondrion
H0005945cellular_component6-phosphofructokinase complex
H0006002biological_processfructose 6-phosphate metabolic process
H0006096biological_processglycolytic process
H0016208molecular_functionAMP binding
H0016301molecular_functionkinase activity
H0016310biological_processphosphorylation
H0030388biological_processfructose 1,6-bisphosphate metabolic process
H0042802molecular_functionidentical protein binding
H0046872molecular_functionmetal ion binding
H0048029molecular_functionmonosaccharide binding
H0061621biological_processcanonical glycolysis
H0070095molecular_functionfructose-6-phosphate binding
I0005737cellular_componentcytoplasm
I0006096biological_processglycolytic process
J0005737cellular_componentcytoplasm
J0006096biological_processglycolytic process
K0005737cellular_componentcytoplasm
K0006096biological_processglycolytic process
L0005737cellular_componentcytoplasm
L0006096biological_processglycolytic process
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ATP F 942
ChainResidue
FASP393
FILE414
FPHE553
FILE554
FASN557
FSER558
FTYR394
FILE395
FLYS400
FALA402
FSER403
FSER404
FARG405
FGLN410

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP D 942
ChainResidue
DASP393
DTYR394
DILE395
DLYS400
DSER403
DSER404
DARG405
DGLN410
DILE414
DPHE553
DILE554
DASN557
DSER558

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP B 942
ChainResidue
BASP393
BTYR394
BILE395
BLYS400
BSER403
BSER404
BARG405
BGLN410
BILE414
BPHE553
BILE554
BASN557
BSER558

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP H 942
ChainResidue
HASP393
HTYR394
HILE395
HLYS400
HSER403
HSER404
HARG405
HGLN410
HILE414
HPHE553
HILE554
HASN557
HSER558

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 990
ChainResidue
AGLY219
AGLY220
AGLY313
AASP314
AGLY315
ASER316
ASO4991

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 991
ChainResidue
AGLY220
AGLY358
ASER359
AILE360
AASP361
AARG496
ASO4990

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 943
ChainResidue
AMET403
AHIS493
AARG496
BARG368
BARG460

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 992
ChainResidue
AARG635
ASO4993
BLYS797

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 993
ChainResidue
AARG635
ASO4992
BGLN793
BGLY794
BLYS797

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 994
ChainResidue
AALA608
AARG670
AHIS864
BARG739
BLYS832

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 995
ChainResidue
ATHR575
AARG881
ALYS885

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 990
ChainResidue
AGLY917
EARG643
EHIS644
FARG828

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 I 352
ChainResidue
IARG93
IASP250
ITHR251

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 I 353
ChainResidue
ISER129
ILYS200
IARG204

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 990
ChainResidue
CARG234
CGLY270
CLEU272
CLYS756
CARG230

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 944
ChainResidue
BARG201
BARG205
BARG241
BGLY242
BLYS730
BGLY762
BSER798

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 996
ChainResidue
AARG230
AARG234
AVAL268
AARG269
AGLY270
ALEU272
ALYS756

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 943
ChainResidue
DARG201
DARG205
DARG241
DGLY242
DLYS730
DGLY762
DSER798

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 991
ChainResidue
CSER359
CILE360
CASP361
CARG496
CSO4992

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 990
ChainResidue
GGLY358
GSER359
GILE360
GASP361
GARG496
GSO4992

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 J 352
ChainResidue
JGLY180
JPRO181
JHIS196
JLEU198

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 944
ChainResidue
CARG635
CSO4994
DGLN793
DGLY794
DLYS797

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 992
ChainResidue
CGLY219
CGLY220
CGLY313
CASP314
CGLY315
CSER316
CSO4991

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 945
ChainResidue
CMET403
CHIS493
CARG496
DARG368
DARG460

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 991
ChainResidue
GARG230
GARG234
GARG269
GGLY270
GLYS756
GGLY788

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 H 943
ChainResidue
HARG201
HARG205
HARG241
HGLY242
HLYS730
HGLY762
HSER798

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 993
ChainResidue
CALA608
CARG670
CHIS864
DARG739
DLYS832

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 F 943
ChainResidue
FARG201
FARG205
FARG241
FGLY242
FLYS730
FSER798

site_idDC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 G 992
ChainResidue
GGLY219
GGLY220
GGLY313
GASP314
GGLY315
GSER316
GSO4990

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 H 944
ChainResidue
GARG635
HGLN793
HGLY794
HLYS797

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 991
ChainResidue
EALA608
EARG670
EHIS864
FARG739
FLYS832

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 H 945
ChainResidue
GMET403
GHIS493
GARG496
HARG368
HARG460

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 K 352
ChainResidue
KARG93
KPHE249
KASP250
KTHR251

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 992
ChainResidue
ESER359
EILE360
EASP361
EARG496

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 997
ChainResidue
AARG324
ASER528

site_idDC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 J 353
ChainResidue
JSER129
JLYS200
JARG204

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 F 944
ChainResidue
EMET403
EHIS493
EARG496
FARG368
FARG460

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 998
ChainResidue
AARG670
ASER729
AASN731
AGLY774
ALYS961

site_idEC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 E 993
ChainResidue
EARG230
EARG234
EARG269
EGLY270
ELEU272
ELYS756
EGLY788

site_idEC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 K 353
ChainResidue
KSER129
KLYS200
KARG204

site_idEC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 993
ChainResidue
GARG670
GSER729
GASN731
GGLY774

site_idEC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 G 994
ChainResidue
GALA608
GARG670
GHIS864
HARG739
HLYS832

site_idEC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 994
ChainResidue
CARG635
DLYS797
DSO4944

site_idEC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 995
ChainResidue
CARG324
CPRO524
CILE526
CPRO527
CSER528

site_idEC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 F 945
ChainResidue
EARG635
FGLN793
FGLY794
FLYS797

site_idFC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 E 994
ChainResidue
EARG324
ESER528

site_idFC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 H 946
ChainResidue
GARG643
GHIS644
HASN738
HARG828

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 999
ChainResidue
AARG396
AARG487
BMET375
BHIS466
BARG469

site_idFC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1000
ChainResidue
AGLU401
ATHR471
ASER472
AGLU473
AARG490

site_idFC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1001
ChainResidue
AARG451
AARG618
AVAL655
AGLU656
AASP657
ATRP658
AHIS659

site_idFC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1002
ChainResidue
ASER857
AARG858
ATHR859

site_idFC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 996
ChainResidue
CARG396
CARG487
DMET375
DHIS466
DARG469

site_idFC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 997
ChainResidue
CGLU401
CTHR471
CSER472
CARG490

site_idFC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 998
ChainResidue
CARG451
CARG618
CVAL655
CGLU656
CASP657
CTRP658
CHIS659

site_idGC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 999
ChainResidue
CARG858
CTHR859
DHIS838

site_idGC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 995
ChainResidue
EARG396
EARG487
FMET375
FHIS466
FARG469

site_idGC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 996
ChainResidue
EGLU401
ETHR471
ESER472
EGLU473
EARG490

site_idGC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 E 997
ChainResidue
EARG451
EARG618
EVAL655
EGLU656
EASP657
ETRP658
EHIS659

site_idGC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 G 995
ChainResidue
GARG396
GARG487
HMET375
HHIS466
HARG469

site_idGC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 996
ChainResidue
GGLU401
GTHR471
GSER472
GARG490

site_idGC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 G 997
ChainResidue
GARG451
GGLU656
GASP657
GHIS659

site_idGC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 I 354
ChainResidue
ISER6
IARG9

site_idGC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 I 355
ChainResidue
IASN76
IASN77

site_idHC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 I 356
ChainResidue
IPRO181
IHIS196

site_idHC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 J 354
ChainResidue
JSER6
JARG9

site_idHC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 K 354
ChainResidue
KASN76
KASN77

site_idHC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 L 352
ChainResidue
LSER6
LARG9

site_idHC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 L 353
ChainResidue
LASN76
LASN77

site_idHC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 L 354
ChainResidue
LPRO181
LHIS196
LTYR230

Functional Information from PROSITE/UniProt
site_idPS00433
Number of Residues19
DetailsPHOSPHOFRUCTOKINASE Phosphofructokinase signature. RvttlGHvQRGGtavafDR
ChainResidueDetails
BARG460-ARG478
BLYS832-ARG850
AARG487-ARG505

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_03184
ChainResidueDetails
BASP333
DASP333
FASP333
HASP333

site_idSWS_FT_FI2
Number of Residues72
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03184
ChainResidueDetails
BGLY191
BHIS466
BARG643
BTHR701
BARG739
BGLN746
BGLU806
BLYS832
BHIS838
BARG918
DGLY191
BARG255
DARG255
DGLY285
DASP286
DSER331
DARG368
DMET375
DGLU432
DARG460
DHIS466
DARG643
BGLY285
DTHR701
DARG739
DGLN746
DGLU806
DLYS832
DHIS838
DARG918
FGLY191
FARG255
FGLY285
BASP286
FASP286
FSER331
FARG368
FMET375
FGLU432
FARG460
FHIS466
FARG643
FTHR701
FARG739
BSER331
FGLN746
FGLU806
FLYS832
FHIS838
FARG918
HGLY191
HARG255
HGLY285
HASP286
HSER331
BARG368
HARG368
HMET375
HGLU432
HARG460
HHIS466
HARG643
HTHR701
HARG739
HGLN746
HGLU806
BMET375
HLYS832
HHIS838
HARG918
BGLU432
BARG460

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:20833871, ECO:0007744|PDB:3OPY
ChainResidueDetails
BILE395
FLYS400
FGLN410
FASN557
HILE395
HLYS400
HGLN410
HASN557
BLYS400
BGLN410
BASN557
DILE395
DLYS400
DGLN410
DASN557
FILE395

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon