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3NGZ

Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site

Functional Information from GO Data
ChainGOidnamespacecontents
A0000175molecular_function3'-5'-RNA exonuclease activity
A0000287molecular_functionmagnesium ion binding
A0003676molecular_functionnucleic acid binding
A0004518molecular_functionnuclease activity
A0004527molecular_functionexonuclease activity
A0004540molecular_functionRNA nuclease activity
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006396biological_processRNA processing
A0006974biological_processDNA damage response
A0008033biological_processtRNA processing
A0008310molecular_functionsingle-stranded DNA 3'-5' DNA exonuclease activity
A0008408molecular_function3'-5' exonuclease activity
A0016787molecular_functionhydrolase activity
A0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
A0031125biological_processrRNA 3'-end processing
A0042780biological_processtRNA 3'-end processing
A0042802molecular_functionidentical protein binding
A0042803molecular_functionprotein homodimerization activity
A0043628biological_processregulatory ncRNA 3'-end processing
A0045004biological_processDNA replication proofreading
A0046872molecular_functionmetal ion binding
B0000175molecular_function3'-5'-RNA exonuclease activity
B0000287molecular_functionmagnesium ion binding
B0003676molecular_functionnucleic acid binding
B0004518molecular_functionnuclease activity
B0004527molecular_functionexonuclease activity
B0004540molecular_functionRNA nuclease activity
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0006396biological_processRNA processing
B0006974biological_processDNA damage response
B0008033biological_processtRNA processing
B0008310molecular_functionsingle-stranded DNA 3'-5' DNA exonuclease activity
B0008408molecular_function3'-5' exonuclease activity
B0016787molecular_functionhydrolase activity
B0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
B0031125biological_processrRNA 3'-end processing
B0042780biological_processtRNA 3'-end processing
B0042802molecular_functionidentical protein binding
B0042803molecular_functionprotein homodimerization activity
B0043628biological_processregulatory ncRNA 3'-end processing
B0045004biological_processDNA replication proofreading
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1000
ChainResidue
AASP23
AHOH1001
AHOH1002
AHOH1004
CHOH1003
CHOH1005

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CO A 217
ChainResidue
AARG135
AHOH227

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 2000
ChainResidue
BHOH2002
BHOH2003
BHOH2005
DHOH2001
DHOH2004
BASP23

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CO B 217
ChainResidue
BARG135
BHOH233

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00157, ECO:0000269|PubMed:21317904, ECO:0000269|PubMed:22718982
ChainResidueDetails
AHIS181
BHIS181

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING:
ChainResidueDetails
AASP23
AGLU25
AHIS181
AASP186
BASP23
BGLU25
BHIS181
BASP186

site_idSWS_FT_FI3
Number of Residues10
DetailsSITE: Important for substrate binding and specificity
ChainResidueDetails
APHE29
BPHE146
AGLU73
APHE77
APHE124
APHE146
BPHE29
BGLU73
BPHE77
BPHE124

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PDB entries from 2024-04-24

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