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3NAQ

Apo-form of NAD-dependent formate dehydrogenase from higher-plant Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0005739cellular_componentmitochondrion
A0005829cellular_componentcytosol
A0008863molecular_functionformate dehydrogenase (NAD+) activity
A0009507cellular_componentchloroplast
A0009536cellular_componentplastid
A0009579cellular_componentthylakoid
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0042183biological_processformate catabolic process
A0051287molecular_functionNAD binding
B0005739cellular_componentmitochondrion
B0005829cellular_componentcytosol
B0008863molecular_functionformate dehydrogenase (NAD+) activity
B0009507cellular_componentchloroplast
B0009536cellular_componentplastid
B0009579cellular_componentthylakoid
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0042183biological_processformate catabolic process
B0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1
ChainResidue
AARG354
APRO362
AHOH396
AHOH479

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 18
ChainResidue
AGLU359
AASP360
AHOH418
AHOH581

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 20
ChainResidue
AARG185
BLYS45
ATYR184

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 2
ChainResidue
BARG354
BHOH432
BHOH549

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 3
ChainResidue
BGLU359
BASP360
BHOH455

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 19
ChainResidue
BTYR184
BARG185
BASN326
BHOH558

Functional Information from PROSITE/UniProt
site_idPS00065
Number of Residues28
DetailsD_2_HYDROXYACID_DH_1 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. IGTVGaGRIGklllqrlkpfgcn.LLyHD
ChainResidueDetails
AILE194-ASP221

site_idPS00670
Number of Residues23
DetailsD_2_HYDROXYACID_DH_2 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. MLpkCDVIvINmPltekTrgMfN
ChainResidueDetails
AMET244-ASN266

site_idPS00671
Number of Residues17
DetailsD_2_HYDROXYACID_DH_3 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. LKkGvLIVNnARGaIME
ChainResidueDetails
ALEU273-GLU289

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03210
ChainResidueDetails
AILE122
AASN146
BILE122
BASN146

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03210, ECO:0000269|Ref.10
ChainResidueDetails
AARG201
BASN282
BASP308
BHIS332
AASP221
APRO256
AASN282
AASP308
AHIS332
BARG201
BASP221
BPRO256

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Important for catalytic activity => ECO:0000255|HAMAP-Rule:MF_03210
ChainResidueDetails
AARG284
AHIS332
BARG284
BHIS332

223166

PDB entries from 2024-07-31

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