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3N9O

ceKDM7A from C.elegans, complex with H3K4me3 peptide, H3K9me2 peptide and NOG

Functional Information from GO Data
ChainGOidnamespacecontents
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0030527molecular_functionstructural constituent of chromatin
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE2 A 1
ChainResidue
AOGA4
AHOH7
AHIS495
AASP497
AHIS567

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 2
ChainResidue
ACYS198
ACYS201
AHIS252
ACYS255

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 3
ChainResidue
ACYS244
ACYS247
ACYS271
ACYS274

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE OGA A 4
ChainResidue
AFE21
AHOH7
AHOH33
AASN421
ALEU423
ATHR492
AHIS495
AASP497
ATYR505
ALYS512
AHIS567
AVAL569
CMLY9

Functional Information from PROSITE/UniProt
site_idPS01359
Number of Residues77
DetailsZF_PHD_1 Zinc finger PHD-type signature. CggCgkftheddlialeeekkkekekplmskkkshhhkkndfqw.....IgCds..Cqtw.YHflCsgleqfeyylyek................................FfCpkC
ChainResidueDetails
ACYS198-CYS274

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues171
DetailsDomain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20567261","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21251613","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21251613","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"11807039","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11969256","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"14614817","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"14702046","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"PubMed","id":"11807039","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"14702046","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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