| Chain | GOid | namespace | contents |
| A | 0000976 | molecular_function | transcription cis-regulatory region binding |
| A | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| A | 0001223 | molecular_function | transcription coactivator binding |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003682 | molecular_function | chromatin binding |
| A | 0003711 | molecular_function | transcription elongation factor activity |
| A | 0004672 | molecular_function | protein kinase activity |
| A | 0004674 | molecular_function | protein serine/threonine kinase activity |
| A | 0004693 | molecular_function | cyclin-dependent protein serine/threonine kinase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006281 | biological_process | DNA repair |
| A | 0006282 | biological_process | regulation of DNA repair |
| A | 0006366 | biological_process | transcription by RNA polymerase II |
| A | 0006367 | biological_process | transcription initiation at RNA polymerase II promoter |
| A | 0006368 | biological_process | transcription elongation by RNA polymerase II |
| A | 0006468 | biological_process | protein phosphorylation |
| A | 0007346 | biological_process | regulation of mitotic cell cycle |
| A | 0008023 | cellular_component | transcription elongation factor complex |
| A | 0008024 | cellular_component | cyclin/CDK positive transcription elongation factor complex |
| A | 0008283 | biological_process | cell population proliferation |
| A | 0008353 | molecular_function | RNA polymerase II CTD heptapeptide repeat kinase activity |
| A | 0016020 | cellular_component | membrane |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016310 | biological_process | phosphorylation |
| A | 0016605 | cellular_component | PML body |
| A | 0017069 | molecular_function | snRNA binding |
| A | 0019901 | molecular_function | protein kinase binding |
| A | 0031297 | biological_process | replication fork processing |
| A | 0031440 | biological_process | regulation of mRNA 3'-end processing |
| A | 0032968 | biological_process | positive regulation of transcription elongation by RNA polymerase II |
| A | 0036464 | cellular_component | cytoplasmic ribonucleoprotein granule |
| A | 0043923 | biological_process | positive regulation by host of viral transcription |
| A | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| A | 0051147 | biological_process | regulation of muscle cell differentiation |
| A | 0051647 | biological_process | nucleus localization |
| A | 0051726 | biological_process | regulation of cell cycle |
| A | 0070691 | cellular_component | P-TEFb complex |
| A | 0071345 | biological_process | cellular response to cytokine stimulus |
| A | 0097322 | molecular_function | 7SK snRNA binding |
| A | 0106310 | molecular_function | protein serine kinase activity |
| A | 0120186 | biological_process | negative regulation of protein localization to chromatin |
| A | 0120187 | biological_process | positive regulation of protein localization to chromatin |
| A | 0140673 | biological_process | transcription elongation-coupled chromatin remodeling |
| B | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| B | 0016538 | molecular_function | cyclin-dependent protein serine/threonine kinase regulator activity |
| C | 0001070 | molecular_function | RNA-binding transcription regulator activity |
| C | 0001223 | molecular_function | transcription coactivator binding |
| C | 0003723 | molecular_function | RNA binding |
| C | 0004865 | molecular_function | protein serine/threonine phosphatase inhibitor activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005576 | cellular_component | extracellular region |
| C | 0006351 | biological_process | DNA-templated transcription |
| C | 0006915 | biological_process | apoptotic process |
| C | 0010801 | biological_process | negative regulation of peptidyl-threonine phosphorylation |
| C | 0019049 | biological_process | virus-mediated perturbation of host defense response |
| C | 0019904 | molecular_function | protein domain specific binding |
| C | 0030332 | molecular_function | cyclin binding |
| C | 0030430 | cellular_component | host cell cytoplasm |
| C | 0031491 | molecular_function | nucleosome binding |
| C | 0032968 | biological_process | positive regulation of transcription elongation by RNA polymerase II |
| C | 0035035 | molecular_function | histone acetyltransferase binding |
| C | 0039502 | biological_process | symbiont-mediated suppression of host type I interferon-mediated signaling pathway |
| C | 0039525 | biological_process | modulation by virus of host chromatin organization |
| C | 0039606 | biological_process | symbiont-mediated suppression of host translation initiation |
| C | 0042025 | cellular_component | host cell nucleus |
| C | 0042783 | biological_process | evasion of host immune response |
| C | 0042805 | molecular_function | actinin binding |
| C | 0043175 | molecular_function | RNA polymerase core enzyme binding |
| C | 0044196 | cellular_component | host cell nucleolus |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0050434 | biological_process | positive regulation of viral transcription |
| C | 0052170 | biological_process | symbiont-mediated suppression of host innate immune response |
| C | 0140313 | molecular_function | molecular sequestering activity |
| C | 0140537 | molecular_function | transcription regulator activator activity |
| C | 1990970 | molecular_function | trans-activation response element binding |
