3M6R

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41M mutant in complex with actinonin

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0042586	molecular_function	peptide deformylase activity
B	0042586	molecular_function	peptide deformylase activity
C	0042586	molecular_function	peptide deformylase activity
D	0042586	molecular_function	peptide deformylase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	15
Details	BINDING SITE FOR RESIDUE BB2 A 194

Chain	Residue
A	ASP40
A	CYS91
A	LEU92
A	HIS133
A	GLU134
A	HIS137
A	ZN195
A	MET41
A	ILE42
A	GLY43
A	GLN48
A	PHE87
A	ASP88
A	GLU89
A	GLY90

---

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN A 195

Chain	Residue
A	GLN48
A	CYS91
A	HIS133
A	HIS137
A	BB2194

---

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN A 196

Chain	Residue
A	ASP30
A	ASP34
A	ZN197
B	GLU69

---

site_id	AC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN A 197

Chain	Residue
A	ASP30
A	ASP34
A	ZN196
B	ASP30
B	ASP34
B	ZN198

---

site_id	AC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN A 198

Chain	Residue
A	ASP88
B	ASP153

---

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN A 199

Chain	Residue
A	ASP40
A	GLU63
A	HOH264
B	LYS38

---

site_id	AC7
Number of Residues	16
Details	BINDING SITE FOR RESIDUE BB2 B 194

Chain	Residue
B	ASP40
B	MET41
B	ILE42
B	GLY43
B	GLN48
B	PHE87
B	ASP88
B	GLY90
B	CYS91
B	LEU92
B	ARG129
B	ILE130
B	HIS133
B	GLU134
B	HIS137
B	ZN195

---

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN B 195

Chain	Residue
B	GLN48
B	CYS91
B	HIS133
B	HIS137
B	BB2194

---

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN B 196

Chain	Residue
A	LYS38
B	ASP40
B	GLU63

---

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN B 197

Chain	Residue
A	GLU158
B	GLU157
B	GLU160
B	GLU179

---

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN B 198

Chain	Residue
A	GLU69
A	ZN197
B	ASP30
B	ASP34

---

site_id	BC3
Number of Residues	16
Details	BINDING SITE FOR RESIDUE BB2 C 194

Chain	Residue
C	ASP40
C	MET41
C	ILE42
C	GLY43
C	GLN48
C	PHE87
C	ASP88
C	GLU89
C	GLY90
C	CYS91
C	LEU92
C	TYR98
C	HIS133
C	GLU134
C	HIS137
C	ZN195

---

site_id	BC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN C 195

Chain	Residue
C	GLN48
C	CYS91
C	HIS133
C	HIS137
C	BB2194

---

site_id	BC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN C 196

Chain	Residue
C	ASP30
C	ASP34
D	GLU69

---

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN C 197

Chain	Residue
C	ASP40
C	GLU63
D	LYS38

---

site_id	BC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN C 198

Chain	Residue
C	HOH266
D	ASP153

---

site_id	BC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN C 199

Chain	Residue
D	GLU179
D	ZN198
D	HOH477
C	GLU158
D	GLU160

---

site_id	BC9
Number of Residues	16
Details	BINDING SITE FOR RESIDUE BB2 D 194

Chain	Residue
D	ASP40
D	MET41
D	ILE42
D	GLY43
D	GLN48
D	PHE87
D	ASP88
D	GLU89
D	GLY90
D	CYS91
D	LEU92
D	ILE130
D	HIS133
D	GLU134
D	HIS137
D	ZN195

---

site_id	CC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN D 195

Chain	Residue
D	GLN48
D	CYS91
D	HIS133
D	HIS137
D	BB2194

---

site_id	CC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN D 196

Chain	Residue
C	GLU69
D	ASP30
D	ASP34

---

site_id	CC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN D 198

Chain	Residue
C	ZN199
D	GLU157
D	GLU160
D	GLU179
D	HOH467
D	HOH477

---

site_id	CC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ZN D 199

Chain	Residue
D	ASP40
D	GLU63

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Active site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI2
Number of Residues	12
Details	Binding site: {}

Chain

Residue

Details

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