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3M63

Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2

Functional Information from GO Data
ChainGOidnamespacecontents
A0000151cellular_componentubiquitin ligase complex
A0000209biological_processprotein polyubiquitination
A0004842molecular_functionubiquitin-protein transferase activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0006511biological_processubiquitin-dependent protein catabolic process
A0016567biological_processprotein ubiquitination
A0016740molecular_functiontransferase activity
A0031398biological_processpositive regulation of protein ubiquitination
A0034450molecular_functionubiquitin-ubiquitin ligase activity
A0036503biological_processERAD pathway
A0070936biological_processprotein K48-linked ubiquitination
A0071361biological_processcellular response to ethanol
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE 1PE A 962
ChainResidue
AILE329
APRO491
APHE492
AGLN494
AGLU560
AK963
AHOH1138

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K A 963
ChainResidue
AHOH1138
APRO491
A1PE962

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KeaInKangIPvanQrLIYsGkilkD
ChainResidueDetails
BLYS28-ASP53

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
BLYS13

222415

PDB entries from 2024-07-10

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