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3M3J

A new crystal form of Lys48-linked diubiquitin

Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 77
ChainResidue
ALYS6
AHIS68
AHOH359
CLYS6
CHIS68

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 77
ChainResidue
BARG72
BHOH209
AARG42
AGLN49
AARG72
BARG42

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 77
ChainResidue
CARG42
CGLN49
DARG42
DGLN49

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 77
ChainResidue
EARG42
EGLN49
EHOH210
FARG42
FARG72

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
AARG54
EARG72
FARG54
FARG72
AARG72
BARG54
BARG72
CARG54
CARG72
DARG54
DARG72
EARG54

site_idSWS_FT_FI2
Number of Residues6
DetailsSITE: Essential for function
ChainResidueDetails
AHIS68
BHIS68
CHIS68
DHIS68
EHIS68
FHIS68

site_idSWS_FT_FI3
Number of Residues6
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
ASER65
BSER65
CSER65
DSER65
ESER65
FSER65

site_idSWS_FT_FI4
Number of Residues6
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
AGLY76
BGLY76
CGLY76
DGLY76
EGLY76
FGLY76

site_idSWS_FT_FI5
Number of Residues42
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
ALYS6
BLYS27
BLYS29
BLYS33
BLYS48
BLYS63
CLYS6
CLYS11
CLYS27
CLYS29
CLYS33
ALYS11
CLYS48
CLYS63
DLYS6
DLYS11
DLYS27
DLYS29
DLYS33
DLYS48
DLYS63
ELYS6
ALYS27
ELYS11
ELYS27
ELYS29
ELYS33
ELYS48
ELYS63
FLYS6
FLYS11
FLYS27
FLYS29
ALYS29
FLYS33
FLYS48
FLYS63
ALYS33
ALYS48
ALYS63
BLYS6
BLYS11

site_idSWS_FT_FI6
Number of Residues12
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214
ChainResidueDetails
EGLY76
FGLY76
AGLY76
BGLY76
CGLY76
DGLY76

218853

PDB entries from 2024-04-24

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