Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3LV8

1.8 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with TMP, thymidine-5'-diphosphate and ADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004712molecular_functionprotein serine/threonine/tyrosine kinase activity
A0004798molecular_functionthymidylate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006227biological_processdUDP biosynthetic process
A0006233biological_processdTDP biosynthetic process
A0006235biological_processdTTP biosynthetic process
A0009165biological_processnucleotide biosynthetic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
A0046940biological_processnucleoside monophosphate phosphorylation
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ADP A 213
ChainResidue
AGLY13
AVAL194
ACA217
AHOH251
AHOH265
AHOH284
AHOH285
AHOH286
AHOH381
AHOH478
AHOH483
AALA14
AGLY15
ALYS16
ASER17
AARG147
AGLN189
ASER190
AILE191

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE TMP A 214
ChainResidue
AGLU12
AGLU40
APRO41
AARG51
ALYS55
AARG76
AARG98
ASER102
ASER103
ATYR106
AGLN107
AILE157
ACA218
AHOH327
AHOH353
AHOH381
AHOH477

site_idAC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE TYD A 215
ChainResidue
AGLU12
AGLU40
AARG51
ALYS55
AVAL72
AARG76
AARG98
ASER102
ASER103
ATYR106
AGLN107
AGLU158
ACA217
ACA218
AHOH230
AHOH265
AHOH327
AHOH353
AHOH381
AHOH434
AHOH476
AHOH477
AHOH490

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 216
ChainResidue
AGLU92
AHOH314
AHOH441
AHOH479
AHOH480
AHOH481
AHOH482

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 217
ChainResidue
AADP213
ATYD215
AHOH265
AHOH475
AHOH476
AHOH477
AHOH478

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 218
ChainResidue
AGLU12
AGLU158
ATMP214
ATYD215
AHOH327
AHOH434

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 219
ChainResidue
AALA176
AASP179
AVAL182
AHOH231
AHOH232
AHOH392

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 220
ChainResidue
AASN177
AHOH267
AHOH268
AHOH291
AHOH292
AHOH293

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 221
ChainResidue
ALYS130
AHOH225
AHOH266
AHOH328
AHOH379

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 222
ChainResidue
AARG111
AHOH362
AHOH411

Functional Information from PROSITE/UniProt
site_idPS01331
Number of Residues13
DetailsTHYMIDYLATE_KINASE Thymidylate kinase signature. VGDRHdmSSqAYQ
ChainResidueDetails
AVAL95-GLN107

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
AGLY10

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon