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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

3LMV

D-Tyr-tRNA(Tyr) Deacylase from plasmodium falciparum in complex with hepes

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0000166molecular_functionnucleotide binding
A0002161molecular_functionaminoacyl-tRNA deacylase activity
A0003723molecular_functionRNA binding
A0005737cellular_componentcytoplasm
A0006399biological_processtRNA metabolic process
A0016787molecular_functionhydrolase activity
A0051499molecular_functionD-aminoacyl-tRNA deacylase activity
A0051500molecular_functionD-tyrosyl-tRNA(Tyr) deacylase activity
A0106026molecular_functionGly-tRNA(Ala) deacylase activity
A0106074biological_processaminoacyl-tRNA metabolism involved in translational fidelity
B0000049molecular_functiontRNA binding
B0000166molecular_functionnucleotide binding
B0002161molecular_functionaminoacyl-tRNA deacylase activity
B0003723molecular_functionRNA binding
B0005737cellular_componentcytoplasm
B0006399biological_processtRNA metabolic process
B0016787molecular_functionhydrolase activity
B0051499molecular_functionD-aminoacyl-tRNA deacylase activity
B0051500molecular_functionD-tyrosyl-tRNA(Tyr) deacylase activity
B0106026molecular_functionGly-tRNA(Ala) deacylase activity
B0106074biological_processaminoacyl-tRNA metabolism involved in translational fidelity
C0000049molecular_functiontRNA binding
C0000166molecular_functionnucleotide binding
C0002161molecular_functionaminoacyl-tRNA deacylase activity
C0003723molecular_functionRNA binding
C0005737cellular_componentcytoplasm
C0006399biological_processtRNA metabolic process
C0016787molecular_functionhydrolase activity
C0051499molecular_functionD-aminoacyl-tRNA deacylase activity
C0051500molecular_functionD-tyrosyl-tRNA(Tyr) deacylase activity
C0106026molecular_functionGly-tRNA(Ala) deacylase activity
C0106074biological_processaminoacyl-tRNA metabolism involved in translational fidelity
D0000049molecular_functiontRNA binding
D0000166molecular_functionnucleotide binding
D0002161molecular_functionaminoacyl-tRNA deacylase activity
D0003723molecular_functionRNA binding
D0005737cellular_componentcytoplasm
D0006399biological_processtRNA metabolic process
D0016787molecular_functionhydrolase activity
D0051499molecular_functionD-aminoacyl-tRNA deacylase activity
D0051500molecular_functionD-tyrosyl-tRNA(Tyr) deacylase activity
D0106026molecular_functionGly-tRNA(Ala) deacylase activity
D0106074biological_processaminoacyl-tRNA metabolism involved in translational fidelity
E0000049molecular_functiontRNA binding
E0000166molecular_functionnucleotide binding
E0002161molecular_functionaminoacyl-tRNA deacylase activity
E0003723molecular_functionRNA binding
E0005737cellular_componentcytoplasm
E0006399biological_processtRNA metabolic process
E0016787molecular_functionhydrolase activity
E0051499molecular_functionD-aminoacyl-tRNA deacylase activity
E0051500molecular_functionD-tyrosyl-tRNA(Tyr) deacylase activity
E0106026molecular_functionGly-tRNA(Ala) deacylase activity
E0106074biological_processaminoacyl-tRNA metabolism involved in translational fidelity
F0000049molecular_functiontRNA binding
F0000166molecular_functionnucleotide binding
F0002161molecular_functionaminoacyl-tRNA deacylase activity
F0003723molecular_functionRNA binding
F0005737cellular_componentcytoplasm
F0006399biological_processtRNA metabolic process
F0016787molecular_functionhydrolase activity
F0051499molecular_functionD-aminoacyl-tRNA deacylase activity
F0051500molecular_functionD-tyrosyl-tRNA(Tyr) deacylase activity
F0106026molecular_functionGly-tRNA(Ala) deacylase activity
F0106074biological_processaminoacyl-tRNA metabolism involved in translational fidelity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EPE B 165
ChainResidue
AARG7
AGLY149
APRO150
BSER87
BGLN88
BPHE89
BGLY138
BASN139
site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EPE D 165
ChainResidue
CASN66
CGLY149
DSER87
DGLN88
DPHE89
DGLY138
DASN139
CARG7
site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EPE A 165
ChainResidue
ASER87
AGLN88
APHE89
AGLY138
AASN139
BARG7
BASN66
BPRO150
site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EPE C 165
ChainResidue
CSER87
CPHE89
CGLY138
CASN139
CTYR140
DARG7
DGLY149
site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EPE B 166
ChainResidue
BGLU122
CASN110
CLEU113
CASN139
site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO3 B 167
ChainResidue
BARG16
BTYR140
site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO3 F 165
ChainResidue
FSER87
FGLN88
FPHE89
FGLY138
site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO3 B 168
ChainResidue
BSER31
BGLU32
BLYS133
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues15
DetailsMotif: {"description":"C-terminal adenosine nucleotide of tRNA","evidences":[{"source":"PubMed","id":"20007323","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3KO4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3KO5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues6
DetailsMotif: {"description":"Gly-cisPro motif, allows the protein to recognize chirality of D-amino acids","evidences":[{"source":"PubMed","id":"24302572","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues6
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"20007323","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues5
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20007323","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3KO5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20007323","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3KO4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3KO5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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