3LMT
Crystal structure of DTD from Plasmodium falciparum
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000049 | molecular_function | tRNA binding |
A | 0000166 | molecular_function | nucleotide binding |
A | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006399 | biological_process | tRNA metabolic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0051499 | molecular_function | D-aminoacyl-tRNA deacylase activity |
A | 0051500 | molecular_function | D-tyrosyl-tRNA(Tyr) deacylase activity |
A | 0106026 | molecular_function | Gly-tRNA(Ala) hydrolase activity |
A | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
B | 0000049 | molecular_function | tRNA binding |
B | 0000166 | molecular_function | nucleotide binding |
B | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006399 | biological_process | tRNA metabolic process |
B | 0016787 | molecular_function | hydrolase activity |
B | 0051499 | molecular_function | D-aminoacyl-tRNA deacylase activity |
B | 0051500 | molecular_function | D-tyrosyl-tRNA(Tyr) deacylase activity |
B | 0106026 | molecular_function | Gly-tRNA(Ala) hydrolase activity |
B | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
C | 0000049 | molecular_function | tRNA binding |
C | 0000166 | molecular_function | nucleotide binding |
C | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006399 | biological_process | tRNA metabolic process |
C | 0016787 | molecular_function | hydrolase activity |
C | 0051499 | molecular_function | D-aminoacyl-tRNA deacylase activity |
C | 0051500 | molecular_function | D-tyrosyl-tRNA(Tyr) deacylase activity |
C | 0106026 | molecular_function | Gly-tRNA(Ala) hydrolase activity |
C | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
D | 0000049 | molecular_function | tRNA binding |
D | 0000166 | molecular_function | nucleotide binding |
D | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006399 | biological_process | tRNA metabolic process |
D | 0016787 | molecular_function | hydrolase activity |
D | 0051499 | molecular_function | D-aminoacyl-tRNA deacylase activity |
D | 0051500 | molecular_function | D-tyrosyl-tRNA(Tyr) deacylase activity |
D | 0106026 | molecular_function | Gly-tRNA(Ala) hydrolase activity |
D | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
E | 0000049 | molecular_function | tRNA binding |
E | 0000166 | molecular_function | nucleotide binding |
E | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0006399 | biological_process | tRNA metabolic process |
E | 0016787 | molecular_function | hydrolase activity |
E | 0051499 | molecular_function | D-aminoacyl-tRNA deacylase activity |
E | 0051500 | molecular_function | D-tyrosyl-tRNA(Tyr) deacylase activity |
E | 0106026 | molecular_function | Gly-tRNA(Ala) hydrolase activity |
E | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
F | 0000049 | molecular_function | tRNA binding |
F | 0000166 | molecular_function | nucleotide binding |
F | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0006399 | biological_process | tRNA metabolic process |
F | 0016787 | molecular_function | hydrolase activity |
F | 0051499 | molecular_function | D-aminoacyl-tRNA deacylase activity |
F | 0051500 | molecular_function | D-tyrosyl-tRNA(Tyr) deacylase activity |
F | 0106026 | molecular_function | Gly-tRNA(Ala) hydrolase activity |
F | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE IOD A 165 |
Chain | Residue |
A | SER87 |
A | TYR116 |
A | GLY135 |
A | PHE137 |
site_id | AC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD A 166 |
Chain | Residue |
A | ASN147 |
B | ASN147 |
site_id | AC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD A 167 |
Chain | Residue |
A | ARG16 |
A | GLU26 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD A 169 |
Chain | Residue |
A | LEU105 |
A | ARG2 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE IOD B 165 |
Chain | Residue |
B | SER87 |
B | TYR116 |
B | GLY135 |
B | PHE137 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD B 166 |
Chain | Residue |
B | HOH199 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE IOD B 167 |
Chain | Residue |
A | ARG57 |
A | HOH177 |
B | ASN99 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD B 168 |
Chain | Residue |
B | ARG16 |
B | GLU26 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE IOD B 169 |
Chain | Residue |
B | ARG2 |
B | PHE92 |
B | LEU105 |
B | HOH195 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE IOD C 165 |
Chain | Residue |
C | SER87 |
C | TYR116 |
C | GLY135 |
C | PHE137 |
site_id | BC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD C 166 |
Chain | Residue |
C | LYS58 |
D | ASN99 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE IOD C 167 |
Chain | Residue |
C | GLN6 |
C | ASN147 |
D | ASN147 |
site_id | BC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD C 168 |
Chain | Residue |
C | PHE92 |
site_id | BC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD C 169 |
Chain | Residue |
C | ILE43 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE IOD D 165 |
Chain | Residue |
D | SER87 |
D | TYR116 |
D | GLY135 |
site_id | BC7 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD D 166 |
Chain | Residue |
D | ASN69 |
site_id | BC8 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD D 167 |
Chain | Residue |
D | LYS58 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE IOD E 165 |
Chain | Residue |
E | GLN6 |
E | ASN147 |
F | ASN147 |
site_id | CC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE IOD E 166 |
Chain | Residue |
E | SER87 |
E | TYR116 |
E | GLY135 |
E | PHE137 |
site_id | CC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD E 167 |
Chain | Residue |
E | ASN61 |
F | ASN99 |
site_id | CC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE IOD E 168 |
Chain | Residue |
E | ARG2 |
E | ASN94 |
E | LEU105 |
site_id | CC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD E 169 |
Chain | Residue |
E | ILE43 |
E | SER87 |
site_id | CC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE IOD E 170 |
Chain | Residue |
A | ASN99 |
E | ASN80 |
E | ASN128 |
site_id | CC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE IOD F 165 |
Chain | Residue |
F | TYR116 |
F | GLY135 |
F | PHE137 |
site_id | CC7 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD F 167 |
Chain | Residue |
F | ARG2 |
site_id | CC8 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD F 168 |
Chain | Residue |
F | ARG57 |
site_id | CC9 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD F 169 |
Chain | Residue |
F | ILE43 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: Nucleophile => ECO:0000305|PubMed:20007323 |
Chain | Residue | Details |
A | THR90 | |
B | THR90 | |
C | THR90 | |
D | THR90 | |
E | THR90 | |
F | THR90 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000305|PubMed:20007323, ECO:0007744|PDB:3KO5 |
Chain | Residue | Details |
A | TRP72 | |
B | TRP72 | |
C | TRP72 | |
D | TRP72 | |
E | TRP72 | |
F | TRP72 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000305|PubMed:20007323, ECO:0007744|PDB:3KO4, ECO:0007744|PDB:3KO5 |
Chain | Residue | Details |
A | PHE89 | |
B | PHE89 | |
C | PHE89 | |
D | PHE89 | |
E | PHE89 | |
F | PHE89 |