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3LKT

Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005506molecular_functioniron ion binding
A0008199molecular_functionferric iron binding
A0009056biological_processcatabolic process
A0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
A0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
A0042952biological_processbeta-ketoadipate pathway
A0051213molecular_functiondioxygenase activity
B0003824molecular_functioncatalytic activity
B0005506molecular_functioniron ion binding
B0008199molecular_functionferric iron binding
B0009056biological_processcatabolic process
B0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
B0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
B0042952biological_processbeta-ketoadipate pathway
B0051213molecular_functiondioxygenase activity
C0003824molecular_functioncatalytic activity
C0005506molecular_functioniron ion binding
C0008199molecular_functionferric iron binding
C0009056biological_processcatabolic process
C0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
C0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
C0042952biological_processbeta-ketoadipate pathway
C0051213molecular_functiondioxygenase activity
D0003824molecular_functioncatalytic activity
D0005506molecular_functioniron ion binding
D0008199molecular_functionferric iron binding
D0009056biological_processcatabolic process
D0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
D0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
D0042952biological_processbeta-ketoadipate pathway
D0051213molecular_functiondioxygenase activity
E0003824molecular_functioncatalytic activity
E0005506molecular_functioniron ion binding
E0008199molecular_functionferric iron binding
E0009056biological_processcatabolic process
E0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
E0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
E0042952biological_processbeta-ketoadipate pathway
E0051213molecular_functiondioxygenase activity
F0003824molecular_functioncatalytic activity
F0005506molecular_functioniron ion binding
F0008199molecular_functionferric iron binding
F0009056biological_processcatabolic process
F0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
F0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
F0042952biological_processbeta-ketoadipate pathway
F0051213molecular_functiondioxygenase activity
M0003824molecular_functioncatalytic activity
M0005506molecular_functioniron ion binding
M0008199molecular_functionferric iron binding
M0009056biological_processcatabolic process
M0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
M0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
M0019619biological_process3,4-dihydroxybenzoate catabolic process
M0042952biological_processbeta-ketoadipate pathway
M0046872molecular_functionmetal ion binding
M0051213molecular_functiondioxygenase activity
N0003824molecular_functioncatalytic activity
N0005506molecular_functioniron ion binding
N0008199molecular_functionferric iron binding
N0009056biological_processcatabolic process
N0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
N0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
N0019619biological_process3,4-dihydroxybenzoate catabolic process
N0042952biological_processbeta-ketoadipate pathway
N0046872molecular_functionmetal ion binding
N0051213molecular_functiondioxygenase activity
O0003824molecular_functioncatalytic activity
O0005506molecular_functioniron ion binding
O0008199molecular_functionferric iron binding
O0009056biological_processcatabolic process
O0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
O0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
O0019619biological_process3,4-dihydroxybenzoate catabolic process
O0042952biological_processbeta-ketoadipate pathway
O0046872molecular_functionmetal ion binding
O0051213molecular_functiondioxygenase activity
P0003824molecular_functioncatalytic activity
P0005506molecular_functioniron ion binding
P0008199molecular_functionferric iron binding
P0009056biological_processcatabolic process
P0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
P0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
P0019619biological_process3,4-dihydroxybenzoate catabolic process
P0042952biological_processbeta-ketoadipate pathway
P0046872molecular_functionmetal ion binding
P0051213molecular_functiondioxygenase activity
Q0003824molecular_functioncatalytic activity
Q0005506molecular_functioniron ion binding
Q0008199molecular_functionferric iron binding
Q0009056biological_processcatabolic process
Q0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Q0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
Q0019619biological_process3,4-dihydroxybenzoate catabolic process
Q0042952biological_processbeta-ketoadipate pathway
Q0046872molecular_functionmetal ion binding
Q0051213molecular_functiondioxygenase activity
R0003824molecular_functioncatalytic activity
R0005506molecular_functioniron ion binding
R0008199molecular_functionferric iron binding
R0009056biological_processcatabolic process
R0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
R0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
R0019619biological_process3,4-dihydroxybenzoate catabolic process
R0042952biological_processbeta-ketoadipate pathway
R0046872molecular_functionmetal ion binding
R0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 201
ChainResidue
AASN37
ATHR105
AHIS107
AHOH1777

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BME A 202
ChainResidue
AGLY191
AGLU192
AHOH2075
ATYR56
AASP57
AARG188
AILE189
AGLN190

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE TRS A 203
ChainResidue
ATHR169
AILE171
AARG184
APHE185
AASP186
AARG188
AHOH2346
AHOH2672
AHOH2673

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE M 600
ChainResidue
MBME29
MTYR408
MHIS460
MHIS462

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL M 7
ChainResidue
MLYS325
MILE328
MALA329
MHOH2298
MHOH2546
OHOH38

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL M 8
ChainResidue
MHIS534
MPHE535

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL M 9
ChainResidue
MCYS429
MLEU430
MHOH931

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL M 14
ChainResidue
MARG383

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL M 16
ChainResidue
MGLN503
MILE505
MLYS507
MARG522
MPHE523
MASP524

site_idBC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE BME M 21
ChainResidue
APRO15
AARG133
MBME29
MTYR324
MTHR326
MTRP449
MILE491
MHOH874
MHOH2281
MHOH2282
MHOH2291

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BME M 29
ChainResidue
APRO15
ATYR16
MBME21
MHOH225
MTYR408
MARG457
MHIS460
MHIS462
MFE600

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BME M 36
ChainResidue
MILE339
MPRO340
MHOH1268
MHOH2624
MHOH2651
NARG450
NPRO453
QPRO515

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE BME M 47
ChainResidue
MARG409
MPRO421

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 201
ChainResidue
BASN37
BTHR105
BHIS107

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE TRS B 202
ChainResidue
BGLU168
BTHR169
BILE171
BARG184
BPHE185
BASP186
BARG188
BHOH2480
BHOH2620

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE N 600
ChainResidue
NBME32
NTYR408
NHIS460
NHIS462

site_idBC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL N 13
ChainResidue
NARG383

site_idBC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BME N 18
ChainResidue
BPRO15
BARG133
NTYR324
NTHR326
NTRP449
NILE491
NHOH542
NHOH2277
NHOH2292

site_idCC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BME N 32
ChainResidue
BPRO15
BTYR16
NTYR408
NARG457
NHIS460
NHIS462
NHOH552
NFE600
NHOH2285

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE BME N 37
ChainResidue
NPHE535

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME N 44
ChainResidue
NGLN503
NPHE523
NASP524
NHOH2609

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 201
ChainResidue
CASN37
CARG38
CTHR105
CHIS107

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 202
ChainResidue
CGLU168
CILE171
CARG184
CPHE185
CASP186
CARG188
CHOH223

site_idCC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BME C 203
ChainResidue
CTYR56
CASP57
CARG188
CILE189
CGLN190
CGLY191
CGLU192

site_idCC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE O 600
ChainResidue
OBME30
OTYR408
OHIS460
OHIS462

site_idCC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL O 12
ChainResidue
OARG383

site_idCC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE BME O 27
ChainResidue
OPHE535
OHOH1701

site_idDC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BME O 30
ChainResidue
CPRO15
CTYR16
OTYR408
OARG457
OHIS460
OHIS462
OFE600
OHOH605

site_idDC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BME O 33
ChainResidue
CPRO15
CARG133
OHOH253
OTYR324
OTHR326
OTRP449
OILE491
OHOH2279
OHOH2280

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BME O 42
ChainResidue
OHOH44
OTHR321
OPRO322
OASP323
OHOH559
OHOH1820

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME O 45
ChainResidue
OARG522
OPHE523
OASP524
OHOH2610

site_idDC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BME O 49
ChainResidue
DGLU176
OPHE356
OCYS429
OLEU430
OHOH1460
OHOH2487

site_idDC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 201
ChainResidue
DASN37
DTHR105
DHIS107
DHOH1092
DHOH1436

site_idDC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE TRS D 202
ChainResidue
DTHR169
DILE171
DARG184
DPHE185
DASP186
DARG188
DHOH2590

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE P 600
ChainResidue
PBME31
PTYR408
PHIS460
PHIS462

site_idDC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL P 15
ChainResidue
PARG383

site_idEC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE BME P 22
ChainResidue
DGLY14
DPRO15
DARG133
PTYR324
PTHR326
PTRP449
PILE491
PHOH811
PHOH2286
PHOH2287
PHOH2650

site_idEC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BME P 23
ChainResidue
PGLN503
PILE505
PPHE523
PASP524
PHOH2294
PHOH2393

site_idEC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME P 25
ChainResidue
PPHE356
PCYS429
PLEU430
PHOH1204

site_idEC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BME P 31
ChainResidue
DPRO15
DTYR16
PTYR408
PARG457
PHIS460
PHIS462
PHOH540
PFE600

site_idEC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE BME P 35
ChainResidue
PARG407
PPRO418
PLEU419

site_idEC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME P 40
ChainResidue
PHOH21
PASN454
PASP455
PMET488
RHOH678

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE BME P 41
ChainResidue
PTHR533
PPHE535

site_idEC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE BME P 48
ChainResidue
PARG409
PPRO421

site_idEC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 E 201
ChainResidue
EASN37
ETHR105
EHIS107

site_idFC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE TRS E 202
ChainResidue
EGLU168
ETHR169
EILE171
EALA172
EARG184
EPHE185
EASP186
EARG188
EHOH2517
EHOH2621

site_idFC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE Q 600
ChainResidue
QBME34
QTYR408
QHIS460
QHIS462

site_idFC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL Q 11
ChainResidue
QARG383

site_idFC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BME Q 19
ChainResidue
EPRO15
EARG133
QTYR324
QTHR326
QTRP449
QILE491
QHOH626
QHOH2278
QHOH2452

site_idFC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME Q 24
ChainResidue
QGLN503
QPHE523
QASP524
QHOH2332

site_idFC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BME Q 34
ChainResidue
EPRO15
ETYR16
QHOH251
QTYR408
QARG457
QHIS460
QHIS462
QFE600
QHOH623

site_idFC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BME Q 46
ChainResidue
QPHE356
QCYS429
QLEU430
QHOH1300

site_idFC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 F 201
ChainResidue
FASN37
FARG38
FTHR105
FHIS107

site_idFC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE TRS F 202
ChainResidue
FTHR169
FILE171
FARG184
FPHE185
FASP186
FARG188
FHOH2665

site_idGC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE R 600
ChainResidue
RBME28
RTYR408
RHIS460
RHIS462

site_idGC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL R 10
ChainResidue
RARG383

site_idGC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BME R 20
ChainResidue
FPRO15
FARG133
RHOH188
RTYR324
RTHR326
RTRP449
RHOH2289
RHOH2290

site_idGC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE BME R 26
ChainResidue
RHIS534
RPHE535
RHOH1839

site_idGC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BME R 28
ChainResidue
FPRO15
FTYR16
RHOH35
RTYR408
RARG457
RHIS460
RHIS462
RFE600

site_idGC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME R 43
ChainResidue
BILE2
RARG522
RPHE523
RASP524
RHOH2611

Functional Information from PROSITE/UniProt
site_idPS00083
Number of Residues29
DetailsINTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. LlGqVydgnGhlVrdsfLEVwqadanGeY
ChainResidueDetails
ALEU51-TYR79
MVAL380-TYR408

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:7990141
ChainResidueDetails
MTYR408
OHIS447
OHIS460
OHIS462
PTYR408
PHIS447
PHIS460
PHIS462
QTYR408
QHIS447
QHIS460
MHIS447
QHIS462
RTYR408
RHIS447
RHIS460
RHIS462
MHIS460
MHIS462
NTYR408
NHIS447
NHIS460
NHIS462
OTYR408

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
MTYR408metal ligand
MHIS447metal ligand, proton shuttle (general acid/base)
MARG457electrostatic stabiliser
MHIS460metal ligand
MHIS462metal ligand

site_idMCSA2
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
NTYR408metal ligand
NHIS447metal ligand, proton shuttle (general acid/base)
NARG457electrostatic stabiliser
NHIS460metal ligand
NHIS462metal ligand

site_idMCSA3
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
OTYR408metal ligand
OHIS447metal ligand, proton shuttle (general acid/base)
OARG457electrostatic stabiliser
OHIS460metal ligand
OHIS462metal ligand

site_idMCSA4
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
PTYR408metal ligand
PHIS447metal ligand, proton shuttle (general acid/base)
PARG457electrostatic stabiliser
PHIS460metal ligand
PHIS462metal ligand

site_idMCSA5
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
QTYR408metal ligand
QHIS447metal ligand, proton shuttle (general acid/base)
QARG457electrostatic stabiliser
QHIS460metal ligand
QHIS462metal ligand

site_idMCSA6
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
RTYR408metal ligand
RHIS447metal ligand, proton shuttle (general acid/base)
RARG457electrostatic stabiliser
RHIS460metal ligand
RHIS462metal ligand

224572

PDB entries from 2024-09-04

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