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Crystal structure of the 'restriction triad' mutant of HLA B*3508, beta-2-microglobulin and EBV peptide

Functional Information from GO Data
ChainGOidnamespacecontents
B0000139cellular_componentGolgi membrane
B0001913biological_processT cell mediated cytotoxicity
B0001916biological_processpositive regulation of T cell mediated cytotoxicity
B0002237biological_processresponse to molecule of bacterial origin
B0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
B0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
B0002502biological_processpeptide antigen assembly with MHC class I protein complex
B0002503biological_processpeptide antigen assembly with MHC class II protein complex
B0002726biological_processpositive regulation of T cell cytokine production
B0005198molecular_functionstructural molecule activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0005765cellular_componentlysosomal membrane
B0005783cellular_componentendoplasmic reticulum
B0005788cellular_componentendoplasmic reticulum lumen
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0006826biological_processiron ion transport
B0006879biological_processintracellular iron ion homeostasis
B0006955biological_processimmune response
B0007608biological_processsensory perception of smell
B0007611biological_processlearning or memory
B0009897cellular_componentexternal side of plasma membrane
B0009986cellular_componentcell surface
B0010977biological_processnegative regulation of neuron projection development
B0012507cellular_componentER to Golgi transport vesicle membrane
B0016020cellular_componentmembrane
B0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
B0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
B0023026molecular_functionMHC class II protein complex binding
B0030670cellular_componentphagocytic vesicle membrane
B0031901cellular_componentearly endosome membrane
B0031902cellular_componentlate endosome membrane
B0031905cellular_componentearly endosome lumen
B0032092biological_processpositive regulation of protein binding
B0033077biological_processT cell differentiation in thymus
B0034756biological_processregulation of iron ion transport
B0035580cellular_componentspecific granule lumen
B0042026biological_processprotein refolding
B0042605molecular_functionpeptide antigen binding
B0042612cellular_componentMHC class I protein complex
B0042613cellular_componentMHC class II protein complex
B0042802molecular_functionidentical protein binding
B0042803molecular_functionprotein homodimerization activity
B0042824cellular_componentMHC class I peptide loading complex
B0045646biological_processregulation of erythrocyte differentiation
B0048260biological_processpositive regulation of receptor-mediated endocytosis
B0050680biological_processnegative regulation of epithelial cell proliferation
B0050768biological_processnegative regulation of neurogenesis
B0050778biological_processpositive regulation of immune response
B0050870biological_processpositive regulation of T cell activation
B0051289biological_processprotein homotetramerization
B0055038cellular_componentrecycling endosome membrane
B0060586biological_processmulticellular organismal-level iron ion homeostasis
B0070062cellular_componentextracellular exosome
B0071281biological_processcellular response to iron ion
B0071283biological_processcellular response to iron(III) ion
B0071316biological_processcellular response to nicotine
B1900121biological_processnegative regulation of receptor binding
B1900122biological_processpositive regulation of receptor binding
B1904434biological_processpositive regulation of ferrous iron binding
B1904437biological_processpositive regulation of transferrin receptor binding
B1904724cellular_componenttertiary granule lumen
B1990000biological_processamyloid fibril formation
B1990712cellular_componentHFE-transferrin receptor complex
B2000774biological_processpositive regulation of cellular senescence
B2000978biological_processnegative regulation of forebrain neuron differentiation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACY A 1002
ChainResidue
AARG234
AGLN242
BSER11

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACY A 277
ChainResidue
AGLN226
AASP227

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACY A 278
ChainResidue
AHOH335
AASP39
AASN127
AASP129
AHIS197

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACY A 279
ChainResidue
ASER92
AHIS93
AASP119
BILE1

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACY A 280
ChainResidue
ATYR85

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACY A 281
ChainResidue
AARG6
AASP102
AHOH454

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACY A 282
ChainResidue
AARG35
AGLU46
APRO47
AARG48
AHOH395
AHOH528

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 283
ChainResidue
ASER131
ATRP133
ATRP147
AGLU148
AARG151
AVAL152
AALA153
AGLU154

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG A 284
ChainResidue
ASER4
AARG6
AASP29
AHOH377
BLYS58
BPEG100

site_idBC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PEG A 285
ChainResidue
AASN70
ATYR74
AARG97
AARG156
AHOH547
CGLU3
CPRO4
CPRO6
CLEU10
CPEG14

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A 286
ChainResidue
AARG145
AGLU148
AARG151
BGLU47

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 287
ChainResidue
ATHR233
APHE241
BTYR26
BSER57
BPEG100

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG A 288
ChainResidue
ASER2
AHIS3
AASP29
ALEU179
ATYR209
APRO210
AGLU264
AHOH309
AHOH355

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG A 289
ChainResidue
AARG44
ATHR45
ATRP60
AASP61
ATHR64
AHOH366

site_idBC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PEG B 100
ChainResidue
APHE8
ATYR27
AASP29
AASP30
APEG284
APEG287
BPHE56
BSER57
BLYS58
BTYR63

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG C 14
ChainResidue
AARG156
APEG285
CLEU10
CTHR11
CTYR13
CHOH311

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH
ChainResidueDetails
BTYR78-HIS84
ATYR257-HIS263

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
ChainResidueDetails
BGLN2
ATYR84
ATHR143
ALYS146
AVAL152
ATYR159
ATYR171

site_idSWS_FT_FI2
Number of Residues1
DetailsCARBOHYD: N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443
ChainResidueDetails
BILE1

site_idSWS_FT_FI3
Number of Residues6
DetailsCARBOHYD: N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
ChainResidueDetails
BLYS19
BLYS41
BLYS48
BLYS58
BLYS91
BLYS94

222415

PDB entries from 2024-07-10

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