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3KHL

Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE TTP A 414
ChainResidue
AASP7
AALA57
AASP105
ALYS159
ACA415
ACA416
AHOH529
DHOH510
DDDG815
EDA904
APHE8
ATYR10
APHE11
ATYR12
AALA44
ATHR45
ATYR48
AARG51

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 415
ChainResidue
AASP7
AASP105
AGLU106
ATTP414
ACA416
DHOH510
DDDG815

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 416
ChainResidue
AASP7
APHE8
AASP105
ATTP414
ACA415

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 417
ChainResidue
AALA181
AILE186
AHOH512
AHOH513
AHOH514
AHOH515
DDA814

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AF E 926
ChainResidue
AILE248
AHIS285
AVAL287
AVAL335
AARG336
EDC905
EDG906
EDC907

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE TTP B 1414
ChainResidue
BHOH54
BHOH72
BASP1007
BPHE1008
BASP1009
BTYR1010
BPHE1011
BTYR1012
BALA1044
BTHR1045
BTYR1048
BARG1051
BALA1057
BASP1105
BLYS1159
BCA1415
BCA1416
BHOH1519
HDDG1815
JDA1904

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 1415
ChainResidue
BHOH161
BASP1007
BGLU1106
BLYS1159
BTTP1414
BHOH1519
HDDG1815

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 1416
ChainResidue
BASP1007
BPHE1008
BASP1105
BTTP1414

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 1417
ChainResidue
BALA1181
BILE1186
BHOH1512
HHOH1511

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AF J 1926
ChainResidue
BILE1248
BHIS1285
BVAL1287
BVAL1335
BARG1336
JDC1905
JDG1906
JDC1907

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU1106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP1007
BASP1105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR1012

225158

PDB entries from 2024-09-18

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