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3KD6

Crystal Structure of Nucleoside Kinase from Chlorobium tepidum in Complex with AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005829cellular_componentcytosol
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
B0000166molecular_functionnucleotide binding
B0005829cellular_componentcytosol
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE AMP A 509
ChainResidue
ASER8
APHE151
ATRP152
AGLY234
AGLY236
AASP237
AHOH330
AHOH336
AHOH400
AHOH435
AASP12
AGLY27
ATYR31
APHE81
ATRP83
AARG94
AASN125
AMSE149

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 501
ChainResidue
AASP147
AILE171
AVAL172
AASN173
AGLU176
AGLY236
AASP237
AHOH313
AHOH318

site_idAC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE AMP B 509
ChainResidue
BSER8
BASP12
BGLY27
BTYR31
BPHE81
BTRP83
BARG94
BASN125
BMSE149
BPHE151
BTRP152
BGLY234
BASP237
BHOH325
BHOH326
BHOH327

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 501
ChainResidue
BASP147
BASN173
BGLU176
BGLY236
BASP237
BHOH315
BHOH448

Functional Information from PROSITE/UniProt
site_idPS00584
Number of Residues14
DetailsPFKB_KINASES_2 pfkB family of carbohydrate kinases signature 2. DPtGAGDtfaGGFI
ChainResidueDetails
AASP231-ILE244

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1lij
ChainResidueDetails
AASP237
AARG86

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1lij
ChainResidueDetails
BASP237
BARG86

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1lij
ChainResidueDetails
AGLY236
AGLY234
AASP237
AALA235

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1lij
ChainResidueDetails
BGLY236
BGLY234
BASP237
BALA235

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1lij
ChainResidueDetails
ALYS204
AGLY234

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1lij
ChainResidueDetails
BLYS204
BGLY234

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PDB entries from 2025-06-18

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