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3K5M

Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0008296molecular_function3'-5'-DNA exonuclease activity
A0009432biological_processSOS response
A0034061molecular_functionDNA polymerase activity
A0045004biological_processDNA replication proofreading
A0071897biological_processDNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE DG3 A 914
ChainResidue
AASP419
AASP547
AHOH826
AHOH865
AHOH930
AHOH957
ACA1001
ACA1002
AHOH1115
PDG913
TDC802
ATYR420
TDC803
ALYS421
ASER422
ALEU423
AARG477
ALYS493
AASN497
ATYR500

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 1001
ChainResidue
AASP419
ATYR420
AASP547
ADG3914

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 1002
ChainResidue
AASP419
AASP547
ADG3914
PDG913

Functional Information from PROSITE/UniProt
site_idPS00116
Number of Residues9
DetailsDNA_POLYMERASE_B DNA polymerase family B signature. YGDTDSTFV
ChainResidueDetails
ATYR543-VAL551

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PDB entries from 2024-11-06

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