3J6P
Pseudo-atomic model of dynein microtubule binding domain-tubulin complex based on a cryoEM map
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000226 | biological_process | microtubule cytoskeleton organization |
A | 0000278 | biological_process | mitotic cell cycle |
A | 0005200 | molecular_function | structural constituent of cytoskeleton |
A | 0005525 | molecular_function | GTP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005856 | cellular_component | cytoskeleton |
A | 0005874 | cellular_component | microtubule |
A | 0007017 | biological_process | microtubule-based process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0031514 | cellular_component | motile cilium |
A | 0046872 | molecular_function | metal ion binding |
B | 0000226 | biological_process | microtubule cytoskeleton organization |
B | 0000278 | biological_process | mitotic cell cycle |
B | 0003924 | molecular_function | GTPase activity |
B | 0005200 | molecular_function | structural constituent of cytoskeleton |
B | 0005515 | molecular_function | protein binding |
B | 0005525 | molecular_function | GTP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005856 | cellular_component | cytoskeleton |
B | 0005874 | cellular_component | microtubule |
B | 0007017 | biological_process | microtubule-based process |
B | 0046872 | molecular_function | metal ion binding |
D | 0007018 | biological_process | microtubule-based movement |
D | 0030286 | cellular_component | dynein complex |
D | 0045505 | molecular_function | dynein intermediate chain binding |
D | 0051959 | molecular_function | dynein light intermediate chain binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG A 501 |
Chain | Residue |
A | GLN11 |
A | GLU71 |
A | GTP502 |
site_id | AC2 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE GTP A 502 |
Chain | Residue |
A | ASN101 |
A | GLY142 |
A | GLY143 |
A | GLY144 |
A | THR145 |
A | GLY146 |
A | THR179 |
A | GLU183 |
A | ASN206 |
A | TYR224 |
A | ASN228 |
A | MG501 |
B | LEU248 |
B | LYS254 |
A | GLY10 |
A | GLN11 |
A | ALA12 |
A | GLN15 |
A | ALA99 |
A | ALA100 |
site_id | AC3 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE GDP B 501 |
Chain | Residue |
B | GLY10 |
B | GLN11 |
B | CYS12 |
B | GLN15 |
B | SER140 |
B | GLY142 |
B | GLY143 |
B | GLY144 |
B | THR145 |
B | GLY146 |
B | ASP179 |
B | GLU183 |
B | ASN206 |
B | TYR224 |
B | ASN228 |
site_id | AC4 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE TA1 B 502 |
Chain | Residue |
B | VAL23 |
B | ASP26 |
B | GLU27 |
B | ASP226 |
B | HIS229 |
B | LEU230 |
B | ALA233 |
B | SER236 |
B | PHE272 |
B | LEU275 |
B | THR276 |
B | ARG278 |
B | PRO360 |
B | ARG369 |
B | GLY370 |
B | LEU371 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 7 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:Q13509 |
Chain | Residue | Details |
B | GLN11 | |
B | SER140 | |
B | GLY144 | |
B | THR145 | |
B | GLY146 | |
B | ASN206 | |
B | ASN228 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:P68363 |
Chain | Residue | Details |
B | GLU71 | |
A | GLU71 | |
A | SER140 | |
A | GLY144 | |
A | THR145 | |
A | THR179 | |
A | ASN206 | |
A | ASN228 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P99024 |
Chain | Residue | Details |
B | SER40 |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P99024 |
Chain | Residue | Details |
B | LYS60 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine; by CDK1 => ECO:0000250|UniProtKB:Q13885 |
Chain | Residue | Details |
B | SER174 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
B | THR287 | |
B | THR292 |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | MOD_RES: Omega-N-methylarginine => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
B | ARG320 |
site_id | SWS_FT_FI8 |
Number of Residues | 1 |
Details | MOD_RES: 5-glutamyl polyglutamate => ECO:0000250|UniProtKB:Q2T9S0 |
Chain | Residue | Details |
B | GLU448 |
site_id | SWS_FT_FI9 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
B | LYS60 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
B | LYS326 |