3J6F

Minimized average structure of GDP-bound dynamic microtubules

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000226	biological_process	microtubule cytoskeleton organization
A	0000278	biological_process	mitotic cell cycle
A	0005200	molecular_function	structural constituent of cytoskeleton
A	0005525	molecular_function	GTP binding
A	0005737	cellular_component	cytoplasm
A	0005856	cellular_component	cytoskeleton
A	0005874	cellular_component	microtubule
A	0005929	cellular_component	cilium
A	0007017	biological_process	microtubule-based process
A	0016787	molecular_function	hydrolase activity
A	0031514	cellular_component	motile cilium
A	0042995	cellular_component	cell projection
A	0046872	molecular_function	metal ion binding
B	0000166	molecular_function	nucleotide binding
B	0000226	biological_process	microtubule cytoskeleton organization
B	0000278	biological_process	mitotic cell cycle
B	0001764	biological_process	neuron migration
B	0003924	molecular_function	GTPase activity
B	0005200	molecular_function	structural constituent of cytoskeleton
B	0005515	molecular_function	protein binding
B	0005525	molecular_function	GTP binding
B	0005737	cellular_component	cytoplasm
B	0005856	cellular_component	cytoskeleton
B	0005874	cellular_component	microtubule
B	0007017	biological_process	microtubule-based process
B	0046872	molecular_function	metal ion binding
C	0000166	molecular_function	nucleotide binding
C	0000226	biological_process	microtubule cytoskeleton organization
C	0000278	biological_process	mitotic cell cycle
C	0005200	molecular_function	structural constituent of cytoskeleton
C	0005525	molecular_function	GTP binding
C	0005737	cellular_component	cytoplasm
C	0005856	cellular_component	cytoskeleton
C	0005874	cellular_component	microtubule
C	0005929	cellular_component	cilium
C	0007017	biological_process	microtubule-based process
C	0016787	molecular_function	hydrolase activity
C	0031514	cellular_component	motile cilium
C	0042995	cellular_component	cell projection
C	0046872	molecular_function	metal ion binding
D	0000166	molecular_function	nucleotide binding
D	0000226	biological_process	microtubule cytoskeleton organization
D	0000278	biological_process	mitotic cell cycle
D	0001764	biological_process	neuron migration
D	0003924	molecular_function	GTPase activity
D	0005200	molecular_function	structural constituent of cytoskeleton
D	0005515	molecular_function	protein binding
D	0005525	molecular_function	GTP binding
D	0005737	cellular_component	cytoplasm
D	0005856	cellular_component	cytoskeleton
D	0005874	cellular_component	microtubule
D	0007017	biological_process	microtubule-based process
D	0046872	molecular_function	metal ion binding
E	0000166	molecular_function	nucleotide binding
E	0000226	biological_process	microtubule cytoskeleton organization
E	0000278	biological_process	mitotic cell cycle
E	0005200	molecular_function	structural constituent of cytoskeleton
E	0005525	molecular_function	GTP binding
E	0005737	cellular_component	cytoplasm
E	0005856	cellular_component	cytoskeleton
E	0005874	cellular_component	microtubule
E	0005929	cellular_component	cilium
E	0007017	biological_process	microtubule-based process
E	0016787	molecular_function	hydrolase activity
E	0031514	cellular_component	motile cilium
E	0042995	cellular_component	cell projection
E	0046872	molecular_function	metal ion binding
F	0000166	molecular_function	nucleotide binding
F	0000226	biological_process	microtubule cytoskeleton organization
F	0000278	biological_process	mitotic cell cycle
F	0001764	biological_process	neuron migration
F	0003924	molecular_function	GTPase activity
F	0005200	molecular_function	structural constituent of cytoskeleton
F	0005515	molecular_function	protein binding
F	0005525	molecular_function	GTP binding
F	0005737	cellular_component	cytoplasm
F	0005856	cellular_component	cytoskeleton
F	0005874	cellular_component	microtubule
F	0007017	biological_process	microtubule-based process
F	0046872	molecular_function	metal ion binding
G	0000166	molecular_function	nucleotide binding
G	0000226	biological_process	microtubule cytoskeleton organization
G	0000278	biological_process	mitotic cell cycle
G	0005200	molecular_function	structural constituent of cytoskeleton
G	0005525	molecular_function	GTP binding
G	0005737	cellular_component	cytoplasm
G	0005856	cellular_component	cytoskeleton
G	0005874	cellular_component	microtubule
G	0005929	cellular_component	cilium
G	0007017	biological_process	microtubule-based process
G	0016787	molecular_function	hydrolase activity
G	0031514	cellular_component	motile cilium
G	0042995	cellular_component	cell projection
G	0046872	molecular_function	metal ion binding
H	0000166	molecular_function	nucleotide binding
H	0000226	biological_process	microtubule cytoskeleton organization
H	0000278	biological_process	mitotic cell cycle
H	0001764	biological_process	neuron migration
H	0003924	molecular_function	GTPase activity
H	0005200	molecular_function	structural constituent of cytoskeleton
H	0005515	molecular_function	protein binding
H	0005525	molecular_function	GTP binding
H	0005737	cellular_component	cytoplasm
H	0005856	cellular_component	cytoskeleton
H	0005874	cellular_component	microtubule
H	0007017	biological_process	microtubule-based process
H	0046872	molecular_function	metal ion binding
I	0000166	molecular_function	nucleotide binding
I	0000226	biological_process	microtubule cytoskeleton organization
I	0000278	biological_process	mitotic cell cycle
I	0005200	molecular_function	structural constituent of cytoskeleton
I	0005525	molecular_function	GTP binding
I	0005737	cellular_component	cytoplasm
I	0005856	cellular_component	cytoskeleton
I	0005874	cellular_component	microtubule
I	0005929	cellular_component	cilium
I	0007017	biological_process	microtubule-based process
I	0016787	molecular_function	hydrolase activity
I	0031514	cellular_component	motile cilium
I	0042995	cellular_component	cell projection
I	0046872	molecular_function	metal ion binding
J	0000166	molecular_function	nucleotide binding
J	0000226	biological_process	microtubule cytoskeleton organization
J	0000278	biological_process	mitotic cell cycle
J	0001764	biological_process	neuron migration
J	0003924	molecular_function	GTPase activity
J	0005200	molecular_function	structural constituent of cytoskeleton
J	0005515	molecular_function	protein binding
J	0005525	molecular_function	GTP binding
J	0005737	cellular_component	cytoplasm
J	0005856	cellular_component	cytoskeleton
J	0005874	cellular_component	microtubule
J	0007017	biological_process	microtubule-based process
J	0046872	molecular_function	metal ion binding
K	0000166	molecular_function	nucleotide binding
K	0000226	biological_process	microtubule cytoskeleton organization
K	0000278	biological_process	mitotic cell cycle
K	0005200	molecular_function	structural constituent of cytoskeleton
K	0005525	molecular_function	GTP binding
K	0005737	cellular_component	cytoplasm
K	0005856	cellular_component	cytoskeleton
K	0005874	cellular_component	microtubule
K	0005929	cellular_component	cilium
K	0007017	biological_process	microtubule-based process
K	0016787	molecular_function	hydrolase activity
K	0031514	cellular_component	motile cilium
K	0042995	cellular_component	cell projection
K	0046872	molecular_function	metal ion binding
L	0000166	molecular_function	nucleotide binding
L	0000226	biological_process	microtubule cytoskeleton organization
L	0000278	biological_process	mitotic cell cycle
L	0001764	biological_process	neuron migration
L	0003924	molecular_function	GTPase activity
L	0005200	molecular_function	structural constituent of cytoskeleton
L	0005515	molecular_function	protein binding
L	0005525	molecular_function	GTP binding
L	0005737	cellular_component	cytoplasm
L	0005856	cellular_component	cytoskeleton
L	0005874	cellular_component	microtubule
L	0007017	biological_process	microtubule-based process
L	0046872	molecular_function	metal ion binding
M	0000166	molecular_function	nucleotide binding
M	0000226	biological_process	microtubule cytoskeleton organization
M	0000278	biological_process	mitotic cell cycle
M	0005200	molecular_function	structural constituent of cytoskeleton
M	0005525	molecular_function	GTP binding
M	0005737	cellular_component	cytoplasm
M	0005856	cellular_component	cytoskeleton
M	0005874	cellular_component	microtubule
M	0005929	cellular_component	cilium
M	0007017	biological_process	microtubule-based process
M	0016787	molecular_function	hydrolase activity
M	0031514	cellular_component	motile cilium
M	0042995	cellular_component	cell projection
M	0046872	molecular_function	metal ion binding
N	0000166	molecular_function	nucleotide binding
N	0000226	biological_process	microtubule cytoskeleton organization
N	0000278	biological_process	mitotic cell cycle
N	0001764	biological_process	neuron migration
N	0003924	molecular_function	GTPase activity
N	0005200	molecular_function	structural constituent of cytoskeleton
N	0005515	molecular_function	protein binding
N	0005525	molecular_function	GTP binding
N	0005737	cellular_component	cytoplasm
N	0005856	cellular_component	cytoskeleton
N	0005874	cellular_component	microtubule
N	0007017	biological_process	microtubule-based process
N	0046872	molecular_function	metal ion binding
O	0000166	molecular_function	nucleotide binding
O	0000226	biological_process	microtubule cytoskeleton organization
O	0000278	biological_process	mitotic cell cycle
O	0005200	molecular_function	structural constituent of cytoskeleton
O	0005525	molecular_function	GTP binding
O	0005737	cellular_component	cytoplasm
O	0005856	cellular_component	cytoskeleton
O	0005874	cellular_component	microtubule
O	0005929	cellular_component	cilium
O	0007017	biological_process	microtubule-based process
O	0016787	molecular_function	hydrolase activity
O	0031514	cellular_component	motile cilium
O	0042995	cellular_component	cell projection
O	0046872	molecular_function	metal ion binding
P	0000166	molecular_function	nucleotide binding
P	0000226	biological_process	microtubule cytoskeleton organization
P	0000278	biological_process	mitotic cell cycle
P	0001764	biological_process	neuron migration
P	0003924	molecular_function	GTPase activity
P	0005200	molecular_function	structural constituent of cytoskeleton
P	0005515	molecular_function	protein binding
P	0005525	molecular_function	GTP binding
P	0005737	cellular_component	cytoplasm
P	0005856	cellular_component	cytoskeleton
P	0005874	cellular_component	microtubule
P	0007017	biological_process	microtubule-based process
P	0046872	molecular_function	metal ion binding
Q	0000166	molecular_function	nucleotide binding
Q	0000226	biological_process	microtubule cytoskeleton organization
Q	0000278	biological_process	mitotic cell cycle
Q	0005200	molecular_function	structural constituent of cytoskeleton
Q	0005525	molecular_function	GTP binding
Q	0005737	cellular_component	cytoplasm
Q	0005856	cellular_component	cytoskeleton
Q	0005874	cellular_component	microtubule
Q	0005929	cellular_component	cilium
Q	0007017	biological_process	microtubule-based process
Q	0016787	molecular_function	hydrolase activity
Q	0031514	cellular_component	motile cilium
Q	0042995	cellular_component	cell projection
Q	0046872	molecular_function	metal ion binding
R	0000166	molecular_function	nucleotide binding
R	0000226	biological_process	microtubule cytoskeleton organization
R	0000278	biological_process	mitotic cell cycle
R	0001764	biological_process	neuron migration
R	0003924	molecular_function	GTPase activity
R	0005200	molecular_function	structural constituent of cytoskeleton
R	0005515	molecular_function	protein binding
R	0005525	molecular_function	GTP binding
R	0005737	cellular_component	cytoplasm
R	0005856	cellular_component	cytoskeleton
R	0005874	cellular_component	microtubule
R	0007017	biological_process	microtubule-based process
R	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP A 501

Chain	Residue
A	GLN11
A	TYR224
A	ASN228
A	MG502
A	HOH601
B	ASN249
B	LYS254
A	ALA99
A	ASN101
A	SER140
A	GLY143
A	GLY144
A	THR145
A	GLY146
A	ASN206

---

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG A 502

Chain	Residue
A	GTP501
A	HOH601
A	HOH602
A	HOH603
A	HOH604

---

site_id	AC3
Number of Residues	14
Details	BINDING SITE FOR RESIDUE GDP B 901

Chain	Residue
B	GLY10
B	GLN11
B	CYS12
B	GLN15
B	ASN101
B	GLY143
B	GLY144
B	THR145
B	GLY146
B	ASP179
B	GLU183
B	ASN206
B	TYR224
B	ASN228

---

site_id	AC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP C 501

Chain	Residue
C	GLN11
C	ALA99
C	ASN101
C	SER140
C	GLY143
C	GLY144
C	THR145
C	GLY146
C	ASN206
C	TYR224
C	ASN228
C	MG502
C	HOH601
D	ASN249
D	LYS254

---

site_id	AC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG C 502

Chain	Residue
C	GTP501
C	HOH601
C	HOH602
C	HOH603
C	HOH604

---

site_id	AC6
Number of Residues	14
Details	BINDING SITE FOR RESIDUE GDP D 901

Chain	Residue
D	GLY10
D	GLN11
D	CYS12
D	GLN15
D	ASN101
D	GLY143
D	GLY144
D	THR145
D	GLY146
D	ASP179
D	GLU183
D	ASN206
D	TYR224
D	ASN228

---

site_id	AC7
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP E 501

Chain	Residue
E	GLN11
E	ALA99
E	ASN101
E	SER140
E	GLY143
E	GLY144
E	THR145
E	GLY146
E	ASN206
E	TYR224
E	ASN228
E	MG502
E	HOH601
F	ASN249
F	LYS254

---

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG E 502

Chain	Residue
E	GTP501
E	HOH601
E	HOH602
E	HOH603
E	HOH604

---

site_id	AC9
Number of Residues	14
Details	BINDING SITE FOR RESIDUE GDP F 901

Chain	Residue
F	ASN206
F	TYR224
F	ASN228
F	GLY10
F	GLN11
F	CYS12
F	GLN15
F	ASN101
F	GLY143
F	GLY144
F	THR145
F	GLY146
F	ASP179
F	GLU183

---

site_id	BC1
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP G 501

Chain	Residue
G	GLN11
G	ALA99
G	ASN101
G	SER140
G	GLY143
G	GLY144
G	THR145
G	GLY146
G	ASN206
G	TYR224
G	ASN228
G	MG502
G	HOH601
H	ASN249
H	LYS254

---

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG G 502

Chain	Residue
G	GTP501
G	HOH601
G	HOH602
G	HOH603
G	HOH604

---

site_id	BC3
Number of Residues	14
Details	BINDING SITE FOR RESIDUE GDP H 901

Chain	Residue
H	GLY10
H	GLN11
H	CYS12
H	GLN15
H	ASN101
H	GLY143
H	GLY144
H	THR145
H	GLY146
H	ASP179
H	GLU183
H	ASN206
H	TYR224
H	ASN228

---

site_id	BC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP I 501

Chain	Residue
I	GLN11
I	ALA99
I	ASN101
I	SER140
I	GLY143
I	GLY144
I	THR145
I	GLY146
I	ASN206
I	TYR224
I	ASN228
I	MG502
I	HOH601
J	ASN249
J	LYS254

---

site_id	BC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG I 502

Chain	Residue
I	GTP501
I	HOH601
I	HOH602
I	HOH603
I	HOH604

---

site_id	BC6
Number of Residues	14
Details	BINDING SITE FOR RESIDUE GDP J 901

Chain	Residue
J	GLY10
J	GLN11
J	CYS12
J	GLN15
J	ASN101
J	GLY143
J	GLY144
J	THR145
J	GLY146
J	ASP179
J	GLU183
J	ASN206
J	TYR224
J	ASN228

---

site_id	BC7
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP K 501

Chain	Residue
K	GLN11
K	ALA99
K	ASN101
K	SER140
K	GLY143
K	GLY144
K	THR145
K	GLY146
K	ASN206
K	TYR224
K	ASN228
K	MG502
K	HOH601
L	ASN249
L	LYS254

---

site_id	BC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG K 502

Chain	Residue
K	GTP501
K	HOH601
K	HOH602
K	HOH603
K	HOH604

---

site_id	BC9
Number of Residues	14
Details	BINDING SITE FOR RESIDUE GDP L 901

Chain	Residue
L	GLY10
L	GLN11
L	CYS12
L	GLN15
L	ASN101
L	GLY143
L	GLY144
L	THR145
L	GLY146
L	ASP179
L	GLU183
L	ASN206
L	TYR224
L	ASN228

---

site_id	CC1
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP M 501

Chain	Residue
M	GLN11
M	ALA99
M	ASN101
M	SER140
M	GLY143
M	GLY144
M	THR145
M	GLY146
M	ASN206
M	TYR224
M	ASN228
M	MG502
M	HOH601
N	ASN249
N	LYS254

---

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG M 502

Chain	Residue
M	GTP501
M	HOH601
M	HOH602
M	HOH603
M	HOH604

---

site_id	CC3
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GDP N 901

Chain	Residue
C	LEU248
N	GLY10
N	GLN11
N	CYS12
N	GLN15
N	ASN101
N	GLY143
N	GLY144
N	THR145
N	GLY146
N	ASP179
N	GLU183
N	ASN206
N	TYR224
N	ASN228

---

site_id	CC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP O 501

Chain	Residue
O	GLN11
O	ALA99
O	ASN101
O	SER140
O	GLY143
O	GLY144
O	THR145
O	GLY146
O	ASN206
O	TYR224
O	ASN228
O	MG502
O	HOH601
P	ASN249
P	LYS254

---

site_id	CC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG O 502

Chain	Residue
O	GTP501
O	HOH601
O	HOH602
O	HOH603
O	HOH604

---

site_id	CC6
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GDP P 901

Chain	Residue
A	LEU248
P	GLY10
P	GLN11
P	CYS12
P	GLN15
P	ASN101
P	GLY143
P	GLY144
P	THR145
P	GLY146
P	ASP179
P	GLU183
P	ASN206
P	TYR224
P	ASN228

---

site_id	CC7
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GTP Q 501

Chain	Residue
Q	GLN11
Q	ALA99
Q	ASN101
Q	SER140
Q	GLY143
Q	GLY144
Q	THR145
Q	GLY146
Q	ASN206
Q	TYR224
Q	ASN228
Q	MG502
Q	HOH601
R	ASN249
R	LYS254

---

site_id	CC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG Q 502

Chain	Residue
Q	GTP501
Q	HOH601
Q	HOH602
Q	HOH603
Q	HOH604

---

site_id	CC9
Number of Residues	15
Details	BINDING SITE FOR RESIDUE GDP R 901

Chain	Residue
E	LEU248
R	GLY10
R	GLN11
R	CYS12
R	GLN15
R	ASN101
R	GLY143
R	GLY144
R	THR145
R	GLY146
R	ASP179
R	GLU183
R	ASN206
R	TYR224
R	ASN228

---

Functional Information from PROSITE/UniProt

site_id	PS00227
Number of Residues	7
Details	TUBULIN Tubulin subunits alpha, beta, and gamma signature. GGGTGSG

Chain	Residue	Details
B	GLY142-GLY148
A	GLY142-GLY148

---

site_id	PS00228
Number of Residues	4
Details	TUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI

Chain	Residue	Details
B	MET1-ILE4

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	9
Details	Active site: {"evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	162
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"P68363","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	9
Details	Modified residue: {"description":"3'-nitrotyrosine","evidences":[{"source":"UniProtKB","id":"P68373","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	9
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P68373","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	63
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"Q13509","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	9
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P99024","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	9
Details	Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P99024","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	9
Details	Modified residue: {"description":"Phosphoserine; by CDK1","evidences":[{"source":"UniProtKB","id":"Q13885","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	18
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	9
Details	Modified residue: {"description":"Omega-N-methylarginine","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	9
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI12
Number of Residues	18
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P07437","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

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