3J2W

Electron cryo-microscopy of Chikungunya virus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004252	molecular_function	serine-type endopeptidase activity
A	0019028	cellular_component	viral capsid
A	0055036	cellular_component	virion membrane
B	0004252	molecular_function	serine-type endopeptidase activity
B	0019028	cellular_component	viral capsid
B	0055036	cellular_component	virion membrane
C	0004252	molecular_function	serine-type endopeptidase activity
C	0019028	cellular_component	viral capsid
C	0055036	cellular_component	virion membrane
D	0004252	molecular_function	serine-type endopeptidase activity
D	0019028	cellular_component	viral capsid
D	0055036	cellular_component	virion membrane
E	0004252	molecular_function	serine-type endopeptidase activity
E	0019028	cellular_component	viral capsid
E	0055036	cellular_component	virion membrane
F	0004252	molecular_function	serine-type endopeptidase activity
F	0019028	cellular_component	viral capsid
F	0055036	cellular_component	virion membrane
G	0004252	molecular_function	serine-type endopeptidase activity
G	0019028	cellular_component	viral capsid
G	0055036	cellular_component	virion membrane
H	0004252	molecular_function	serine-type endopeptidase activity
H	0019028	cellular_component	viral capsid
H	0055036	cellular_component	virion membrane
I	0004252	molecular_function	serine-type endopeptidase activity
I	0006508	biological_process	proteolysis
J	0004252	molecular_function	serine-type endopeptidase activity
J	0006508	biological_process	proteolysis
K	0004252	molecular_function	serine-type endopeptidase activity
K	0006508	biological_process	proteolysis
L	0004252	molecular_function	serine-type endopeptidase activity
L	0006508	biological_process	proteolysis
M	0005198	molecular_function	structural molecule activity
M	0019028	cellular_component	viral capsid
N	0005198	molecular_function	structural molecule activity
N	0019028	cellular_component	viral capsid
O	0005198	molecular_function	structural molecule activity
O	0019028	cellular_component	viral capsid
P	0005198	molecular_function	structural molecule activity
P	0019028	cellular_component	viral capsid
Q	0005198	molecular_function	structural molecule activity
Q	0019028	cellular_component	viral capsid
R	0005198	molecular_function	structural molecule activity
R	0019028	cellular_component	viral capsid
S	0005198	molecular_function	structural molecule activity
S	0019028	cellular_component	viral capsid
T	0005198	molecular_function	structural molecule activity
T	0019028	cellular_component	viral capsid

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	ACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU01027

Chain	Residue	Details
I	HIS145
L	HIS3145
L	ASP3167
L	SER3219
I	ASP167
I	SER219
J	HIS1145
J	ASP1167
J	SER1219
K	HIS2145
K	ASP2167
K	SER2219

---

site_id	SWS_FT_FI2
Number of Residues	8
Details	SITE: Involved in dimerization of the capsid protein => ECO:0000250|UniProtKB:Q86925

Chain	Residue	Details
I	TYR193
I	ASN226
J	TYR1193
J	ASN1226
K	TYR2193
K	ASN2226
L	TYR3193
L	ASN3226

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	SITE: Cleavage; by autolysis => ECO:0000250|UniProtKB:P03315

Chain	Residue	Details
I	TRP267
J	TRP1267
K	TRP2267
L	TRP3267

---

site_id	SWS_FT_FI4
Number of Residues	12
Details	LIPID: S-palmitoyl cysteine; by host => ECO:0000250

Chain	Residue	Details
Q	CYS896
T	CYS3896
T	CYS3916
T	CYS3917
Q	CYS916
Q	CYS917
R	CYS1896
R	CYS1916
R	CYS1917
S	CYS2896
S	CYS2916
S	CYS2917

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255

Chain	Residue	Details
Q	ASN845
R	ASN1845
S	ASN2845
T	ASN3845

---