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3IVD

Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0009166biological_processnucleotide catabolic process
A0016787molecular_functionhydrolase activity
A0016788molecular_functionhydrolase activity, acting on ester bonds
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0009166biological_processnucleotide catabolic process
B0016787molecular_functionhydrolase activity
B0016788molecular_functionhydrolase activity, acting on ester bonds
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE A 601
ChainResidue
AASP79
AASN111
AHIS212
AHIS251
AMN602
AHOH758

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 602
ChainResidue
AHIS253
AFE601
AHOH758
AASP32
AHIS34
AASP79

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE URI A 603
ChainResidue
AHIS112
ATHR175
ASER177
APRO216
AASN370
AGLY372
AGLY373
AARG375
APHE394
AASN396
APHE466
AASP472
AHOH574
AHOH647
AHOH710

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 604
ChainResidue
AGLY168
AALA171
AGLY214
AHOH679

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE B 601
ChainResidue
BASP79
BASN111
BHIS212
BHIS251
BMN602
BHOH706

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN B 602
ChainResidue
BASP32
BHIS34
BASP79
BHIS253
BFE601
BHOH698
BHOH706

site_idAC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE URI B 603
ChainResidue
BHIS112
BTHR175
BSER177
BASN370
BGLY372
BGLY373
BARG375
BPHE394
BASN396
BPHE466
BASP472
BHOH561
BHOH578
BHOH591
BHOH698

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 604
ChainResidue
BHOH18
BGLY168
BALA171
BGLY214

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues10
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. P..AGaITMGGV
ChainResidueDetails
APRO379-VAL388

site_idPS00786
Number of Residues12
Details5_NUCLEOTIDASE_2 5'-nucleotidase signature 2. FdavtIGNHEFD
ChainResidueDetails
APHE104-ASP115

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PDB entries from 2024-07-17

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