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3IU2

Crystal Structure of human type-I N-myristoyltransferase with bound myristoyl-CoA and inhibitor DDD90096

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
Functional Information from PDB Data
site_idAC1
Number of Residues35
DetailsBINDING SITE FOR RESIDUE MYA A 1001
ChainResidue
AHOH79
APHE247
ALEU248
ACYS249
AVAL250
AARG255
ASER256
ALYS257
AARG258
AVAL259
AALA260
AHOH84
APRO261
ATHR268
AVAL271
APHE277
ATYR281
ATHR282
ALEU287
ATYR479
AHOH554
AHOH587
ATYR117
AHOH588
AHOH611
AHOH636
AHOH637
AHOH673
AHOH698
AGLN118
APHE119
ATRP120
AASN179
ATYR180
AVAL181

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE 096 A 1002
ChainResidue
AVAL181
AGLU182
AASP183
AASP184
APHE188
AARG189
APHE190
AGLY284
ATYR296
AHIS298
APHE311
ASER405
ATYR420
AASN451
AASP471
AHOH1036

site_idAC3
Number of Residues33
DetailsBINDING SITE FOR RESIDUE MYA B 2001
ChainResidue
BTYR117
BGLN118
BPHE119
BTRP120
BASN179
BTYR180
BVAL181
BASN246
BPHE247
BLEU248
BVAL250
BARG255
BSER256
BLYS257
BARG258
BVAL259
BALA260
BPRO261
BTHR268
BPHE277
BTYR281
BTHR282
BLEU287
BTYR479
BHOH599
BHOH702
BHOH715
BHOH748
BHOH749
BHOH765
BHOH769
BHOH821
BHOH914

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE 096 B 2002
ChainResidue
BVAL181
BGLU182
BASP183
BASP184
BPHE188
BARG189
BTYR296
BHIS298
BPHE311
BSER405
BTYR420
BASN451
BASP471

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU244-LYS252

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG
ChainResidueDetails
ALYS466-GLY472

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
AGLN118
AARG258
AVAL259
AALA260
BGLN118
BARG258
BVAL259
BALA260

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32103017, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
APHE119
BSER256
ATRP120
ALEU248
AVAL250
ASER256
BPHE119
BTRP120
BLEU248
BVAL250

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:32103017
ChainResidueDetails
APHE247
BPHE247

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|Ref.19
ChainResidueDetails
ACYS249
BCYS249

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PDB entries from 2024-07-17

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