3IRW

Structure of a c-di-GMP riboswitch from V. cholerae

Functional Information from GO Data

Chain	GOid	namespace	contents
P	0003676	molecular_function	nucleic acid binding
P	0003723	molecular_function	RNA binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	17
Details	BINDING SITE FOR RESIDUE C2E R 1

Chain	Residue
R	IRI3
R	A47
R	A48
R	A49
R	C92
R	C93
R	HOH111
R	HOH124
R	MG674
R	G14
R	A16
R	C17
R	A18
R	G19
R	G20
R	G21
R	C46

---

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE IRI R 670

Chain	Residue
R	C46
R	A47
R	A48
R	A49
R	G85
R	HOH182

---

site_id	AC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE IRI R 2

Chain	Residue
R	U53
R	G56
R	G57
R	C58
R	G80
R	U81
R	HOH102
R	HOH104
R	IRI672

---

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE IRI R 3

Chain	Residue
R	C2E1
R	C17
R	G19
R	G20

---

site_id	AC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE IRI R 4

Chain	Residue
R	IRI7
R	A82
R	G85
R	G86
R	G87
R	HOH172

---

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE IRI R 5

Chain	Residue
R	GTP8
R	G9
R	U10
R	U96
R	G97

---

site_id	AC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IRI R 6

Chain	Residue
R	G32
R	A34
R	HOH180

---

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE IRI R 7

Chain	Residue
R	IRI4
R	G87
R	G88
R	U89
R	HOH114

---

site_id	AC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE IRI R 671

Chain	Residue
R	A24
R	A25
R	G83
R	C84

---

site_id	BC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE IRI R 672

Chain	Residue
R	IRI2
R	A78
R	G79
R	G80
R	HOH104

---

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG R 673

Chain	Residue
R	C22
R	A23
R	G45
R	A49

---

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MG R 674

Chain	Residue
R	C2E1
R	C15
R	HOH111

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	79
Details	Domain: {"description":"RRM 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00176","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	1
Details	Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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