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3IRW

Structure of a c-di-GMP riboswitch from V. cholerae

Functional Information from GO Data
ChainGOidnamespacecontents
P0003676molecular_functionnucleic acid binding
P0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE C2E R 1
ChainResidue
RIRI3
RA47
RA48
RA49
RC92
RC93
RHOH111
RHOH124
RMG674
RG14
RA16
RC17
RA18
RG19
RG20
RG21
RC46

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IRI R 670
ChainResidue
RC46
RA47
RA48
RA49
RG85
RHOH182

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE IRI R 2
ChainResidue
RU53
RG56
RG57
RC58
RG80
RU81
RHOH102
RHOH104
RIRI672

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IRI R 3
ChainResidue
RC2E1
RC17
RG19
RG20

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IRI R 4
ChainResidue
RIRI7
RA82
RG85
RG86
RG87
RHOH172

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IRI R 5
ChainResidue
RGTP8
RG9
RU10
RU96
RG97

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE IRI R 6
ChainResidue
RG32
RA34
RHOH180

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IRI R 7
ChainResidue
RIRI4
RG87
RG88
RU89
RHOH114

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IRI R 671
ChainResidue
RA24
RA25
RG83
RC84

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IRI R 672
ChainResidue
RIRI2
RA78
RG79
RG80
RHOH104

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG R 673
ChainResidue
RC22
RA23
RG45
RA49

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG R 674
ChainResidue
RC2E1
RC15
RHOH111

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues79
DetailsDomain: {"description":"RRM 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00176","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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