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3IRD

Structure of dihydrodipicolinate synthase from Clostridium botulinum

Replaces:  3BI8
Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016829molecular_functionlyase activity
A0019877biological_processdiaminopimelate biosynthetic process
A0044281biological_processsmall molecule metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE MLT A 300
ChainResidue
AALA10
APHE245
AASN249
AHOH492
AHOH556
AHOH583
AGLY44
ATHR45
ATHR46
ALEU102
ATYR134
AARG139
ALYS162
AILE204

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 301
ChainResidue
ACYS153
AASP155
AILE158
AHOH363
AHOH402

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 302
ChainResidue
AGLY166
AGLY166
AASN167
AASN167
AILE168
AILE168

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CL A 303
ChainResidue
ATYR107
ATYR107
ATYR108
ATYR108
AARG139
AARG139
ATHR140
ATHR140

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 294
ChainResidue
AASN258
AASP266
ALEU267
AHOH331
AHOH471

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 295
ChainResidue
ASER95
AMET260
ALEU291
AHOH359
AHOH377
AHOH504

Functional Information from PROSITE/UniProt
site_idPS00583
Number of Residues25
DetailsPFKB_KINASES_1 pfkB family of carbohydrate kinases signature 1. AGtGsNNTaaSiAMSkwaesigvdG
ChainResidueDetails
AALA76-GLY100

site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. AIIvcGTTGEAttmtetE
ChainResidueDetails
AALA39-GLU56

site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YNVPgrTglnItpgtlkelcedkn.IvAVKEA
ChainResidueDetails
ATYR134-ALA164

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
ATYR134
AARG139
ALYS162

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
ATHR46
ATHR45
ALYS162

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PDB entries from 2024-07-24

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