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3I10

Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (NP_812074.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.35 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0006580biological_processethanolamine metabolic process
A0006629biological_processlipid metabolic process
A0006644biological_processphospholipid metabolic process
A0008081molecular_functionphosphoric diester hydrolase activity
A0008889molecular_functionglycerophosphodiester phosphodiesterase activity
A0070291biological_processN-acylethanolamine metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACT A 1
ChainResidue
AARG51
ASER52
AALA53
AASP117
ALYS118
AHOH402
AHOH524

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 2
ChainResidue
ATYR125
ATHR123
AASN124

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 3
ChainResidue
AEDO5
ATHR58
AHOH382
AHOH421

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 4
ChainResidue
ALYS161
ALEU198
APRO229
AHOH318
AHOH438
AHOH574

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 5
ChainResidue
AEDO3
AGLU132
ATHR136
AASP225
AHOH479

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 6
ChainResidue
ALEU42
AASP70
AHIS300
AASN301
AHOH341
AHOH455
AHOH494

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 7
ChainResidue
AEDO16
ATYR289
AASP292
ATYR293
ALYS296
AHOH583

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 8
ChainResidue
AGLY173
AVAL195
AASP197
AHOH572

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 9
ChainResidue
AASN39
AARG280
ATRP299
AHOH303
AHOH613

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 10
ChainResidue
AEDO11
AARG47
AGLU55
ALYS80
AARG94
AHOH468
AHOH490

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 11
ChainResidue
AEDO10
AHOH22
APRO54
AGLU55
ATHR95
ALYS116
AASP117
ALYS118

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 12
ChainResidue
AGLY255
AHIS257
AHOH495

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 13
ChainResidue
APRO36
ALYS37
ALEU191
AHOH503
AHOH592

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 14
ChainResidue
APRO36
ALYS37
ASER38
APHE239
ALYS240
AARG280
AHOH358
AHOH440
AHOH533

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 15
ChainResidue
ALYS99
AGLY100
ATRP105
AASN260
ALEU263
ATHR264
AHOH385
AHOH493
AHOH612

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 16
ChainResidue
AEDO7
ALYS205
ATYR289

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 17
ChainResidue
AASP197
AILE222
ASER224
ASER252
AHOH373
AHOH513

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 18
ChainResidue
ALEU191
AHOH372
AHOH410
ALYS30
AASN166

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 19
ChainResidue
AGLN77
ALYS78
ALYS103
AHOH474
AHOH593

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 20
ChainResidue
AASN90
ATHR91
AHOH492

site_idCC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 21
ChainResidue
ALYS171
AGLU220
AASN247
AHOH353
AHOH406
AHOH508
AHOH555

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PDB entries from 2024-11-06

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