3I10
Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (NP_812074.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.35 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-03-27 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91837,0.97993,0.97920 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 54.223, 76.978, 132.800 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.050 - 1.350 |
R-factor | 0.151 |
Rwork | 0.150 |
R-free | 0.17200 |
Structure solution method | MAD |
RMSD bond length | 0.017 |
RMSD bond angle | 1.710 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.2.5) |
Phasing software | SHELX |
Refinement software | REFMAC (5.5.0053) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.050 | 29.050 | 1.390 |
High resolution limit [Å] | 1.350 | 6.040 | 1.350 |
Rmerge | 0.085 | 0.045 | 0.590 |
Total number of observations | 2525 | 14135 | |
Number of reflections | 61313 | ||
<I/σ(I)> | 9.7 | 23.2 | 1.9 |
Completeness [%] | 100.0 | 98.6 | 100 |
Redundancy | 3.6 | 3.3 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | 0.2000M NaOAc, 30.0000% PEG-8000, 0.1M Cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |