Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3HYC

Crystal structure of E. coli phosphatase YrbI, with Mg, tetragonal form

Functional Information from GO Data
ChainGOidnamespacecontents
A0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
A0009103biological_processlipopolysaccharide biosynthetic process
A0016787molecular_functionhydrolase activity
A0016788molecular_functionhydrolase activity, acting on ester bonds
A0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
A0046872molecular_functionmetal ion binding
B0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
B0009103biological_processlipopolysaccharide biosynthetic process
B0016787molecular_functionhydrolase activity
B0016788molecular_functionhydrolase activity, acting on ester bonds
B0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
B0046872molecular_functionmetal ion binding
C0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
C0009103biological_processlipopolysaccharide biosynthetic process
C0016787molecular_functionhydrolase activity
C0016788molecular_functionhydrolase activity, acting on ester bonds
C0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
C0046872molecular_functionmetal ion binding
D0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
D0009103biological_processlipopolysaccharide biosynthetic process
D0016787molecular_functionhydrolase activity
D0016788molecular_functionhydrolase activity, acting on ester bonds
D0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
D0046872molecular_functionmetal ion binding
E0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
E0009103biological_processlipopolysaccharide biosynthetic process
E0016787molecular_functionhydrolase activity
E0016788molecular_functionhydrolase activity, acting on ester bonds
E0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
E0046872molecular_functionmetal ion binding
F0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
F0009103biological_processlipopolysaccharide biosynthetic process
F0016787molecular_functionhydrolase activity
F0016788molecular_functionhydrolase activity, acting on ester bonds
F0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
F0046872molecular_functionmetal ion binding
G0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
G0009103biological_processlipopolysaccharide biosynthetic process
G0016787molecular_functionhydrolase activity
G0016788molecular_functionhydrolase activity, acting on ester bonds
G0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
G0046872molecular_functionmetal ion binding
H0008781molecular_functionN-acylneuraminate cytidylyltransferase activity
H0009103biological_processlipopolysaccharide biosynthetic process
H0016787molecular_functionhydrolase activity
H0016788molecular_functionhydrolase activity, acting on ester bonds
H0019143molecular_function3-deoxy-manno-octulosonate-8-phosphatase activity
H0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 201
ChainResidue
AASP32
AASP34
AASP125

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
ASER187
BASP32
BASP34
BASP125

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG C 203
ChainResidue
CASP125
CASP32
CASP34

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG D 204
ChainResidue
CSER187
DASP32
DASP34
DASP125

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG E 205
ChainResidue
EASP32
EASP34
EASP125

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG F 206
ChainResidue
ESER187
FASP32
FASP34
FASP125

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG G 207
ChainResidue
GASP32
GASP34
GASP125

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG H 208
ChainResidue
GSER187
HASP32
HASP34
HASP125

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 204
ChainResidue
ASER187
BASP32
BGLY77
BLYS102

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL D 205
ChainResidue
DASP32
DGLY77
DLYS102

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL F 189
ChainResidue
ESER187
FASP32
FGLY77
FLYS102
FILE128

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL G 189
ChainResidue
GASP32
GLYS102
GILE128

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL H 189
ChainResidue
HGLY77
HLYS102

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues88
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"19726684","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

244693

PDB entries from 2025-11-12

PDB statisticsPDBj update infoContact PDBjnumon