3HHW

Complex of a vesicular stomatitis virus empty capsid with the nucleocapsid-binding domain of the phosphoprotein

Functional Information from GO Data

Chain	GOid	namespace	contents
K	0003723	molecular_function	RNA binding
K	0019013	cellular_component	viral nucleocapsid
K	0019028	cellular_component	viral capsid
K	0019029	cellular_component	helical viral capsid
K	0030430	cellular_component	host cell cytoplasm
K	0044423	cellular_component	virion component
K	1990904	cellular_component	ribonucleoprotein complex
L	0003723	molecular_function	RNA binding
L	0019013	cellular_component	viral nucleocapsid
L	0019028	cellular_component	viral capsid
L	0019029	cellular_component	helical viral capsid
L	0030430	cellular_component	host cell cytoplasm
L	0044423	cellular_component	virion component
L	1990904	cellular_component	ribonucleoprotein complex
M	0003723	molecular_function	RNA binding
M	0019013	cellular_component	viral nucleocapsid
M	0019028	cellular_component	viral capsid
M	0019029	cellular_component	helical viral capsid
M	0030430	cellular_component	host cell cytoplasm
M	0044423	cellular_component	virion component
M	1990904	cellular_component	ribonucleoprotein complex
N	0003723	molecular_function	RNA binding
N	0019013	cellular_component	viral nucleocapsid
N	0019028	cellular_component	viral capsid
N	0019029	cellular_component	helical viral capsid
N	0030430	cellular_component	host cell cytoplasm
N	0044423	cellular_component	virion component
N	1990904	cellular_component	ribonucleoprotein complex
O	0003723	molecular_function	RNA binding
O	0019013	cellular_component	viral nucleocapsid
O	0019028	cellular_component	viral capsid
O	0019029	cellular_component	helical viral capsid
O	0030430	cellular_component	host cell cytoplasm
O	0044423	cellular_component	virion component
O	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE TAR M 1

Chain	Residue
C	LEU217
C	ALA259
C	TYR263
M	THR361
M	GLY362
M	THR366

---

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE TAR K 423

Chain	Residue
K	THR101
M	LEU48
M	SER128
K	LYS83
K	GLY99
K	ASP100

---

site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE TAR O 423

Chain	Residue
K	ASP392
O	LYS388
O	PRO389

---

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE TAR K 424

Chain	Residue
K	LYS132
K	MET166
K	GLU209
K	CYS210

---

site_id	AC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE TAR K 425

Chain	Residue
K	ASP224
K	ALA226
K	TRP290
K	SER291
K	VAL292

---

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE TAR K 426

Chain	Residue
K	GLY265
K	GLU267
K	ASP269
K	LYS270

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	5
Details	Modified residue: {"description":"Phosphoserine; by host","evidences":[{"source":"PubMed","id":"9123826","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	5
Details	Modified residue: {"description":"Phosphoserine; by host","evidences":[{"source":"PubMed","id":"7494281","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9123826","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	5
Details	Modified residue: {"description":"Phosphoserine; by host","evidences":[{"source":"PubMed","id":"7494281","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	200
Details	Region: {"description":"Interaction with the phosphoprotein","evidences":[{"source":"UniProtKB","id":"P03521","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	35
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"P03521","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---