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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3HHN

Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD

Functional Information from GO Data

Chain	GOid	namespace	contents
B	0003676	molecular_function	nucleic acid binding
B	0003723	molecular_function	RNA binding
D	0003676	molecular_function	nucleic acid binding
D	0003723	molecular_function	RNA binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG B 184

Chain	Residue
B	HOH183
B	HOH185
B	HOH186
B	HOH187
B	HOH188
B	HOH189

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 1019

Chain	Residue
C	HOH1028
C	HOH1029
C	HOH1030
C	A31
C	A32
C	HOH1027

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 1020

Chain	Residue
C	HOH1031
C	HOH1032
C	HOH1033
C	HOH1034
C	HOH1035
C	HOH1036

site_id	AC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG C 1021

Chain	Residue
C	C70
C	G72
C	U106
C	HOH1037
C	HOH1038
C	HOH1039
C	HOH1040

site_id	AC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 1022

Chain	Residue
C	G77
C	HOH1041
C	HOH1042
C	HOH1043
C	HOH1044
C	HOH1045

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG C 1023

Chain	Residue
C	A4
C	A115
C	HOH1046
C	HOH1047
C	HOH1048
C	HOH1049
C	HOH1050

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 60

Chain	Residue
C	HOH59
C	HOH61
C	HOH62
C	HOH63
C	HOH64
C	HOH65

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 1024

Chain	Residue
C	HOH1051
C	HOH1052
C	HOH1053
C	HOH1054
C	HOH1055
C	HOH1056

site_id	AC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 1025

Chain	Residue
C	HOH1057
C	HOH1058
C	HOH1059
C	HOH1060
C	HOH1061
C	HOH1062

site_id	BC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 1026

Chain	Residue
C	HOH1063
C	HOH1064
C	HOH1065
C	HOH1066
C	HOH1067
C	HOH1068

site_id	BC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 123

Chain	Residue
C	HOH122
C	HOH124
C	HOH125
C	HOH126
C	HOH127
C	HOH128

site_id	BC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 137

Chain	Residue
C	HOH136
C	HOH138
C	HOH139
C	HOH140
C	HOH141
C	HOH142

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 144

Chain	Residue
C	HOH143
C	HOH145
C	HOH146
C	HOH147
C	HOH148
C	HOH149

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 151

Chain	Residue
C	HOH150
C	HOH152
C	HOH153
C	HOH154
C	HOH155
C	HOH156

site_id	BC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 158

Chain	Residue
C	C47
C	HOH157
C	HOH159
C	HOH160
C	HOH161
C	HOH162

site_id	BC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 164

Chain	Residue
C	HOH163
C	HOH165
C	HOH166
C	HOH167
C	HOH168
C	C1009

site_id	BC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 170

Chain	Residue
C	HOH171
C	HOH172
C	HOH173
C	HOH174
C	HOH175
C	HOH169

site_id	BC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 177

Chain	Residue
C	HOH176
C	HOH178
C	HOH179
C	HOH180
C	HOH181
C	HOH182

site_id	CC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 198

Chain	Residue
C	HOH197
C	HOH199
C	HOH200
C	HOH201
C	HOH202
C	G1008

site_id	CC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE MG C 204

Chain	Residue
C	C47
C	G74

site_id	CC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE MG C 222

Chain	Residue
C	A31

site_id	CC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1019

Chain	Residue
E	A31
E	A32
E	HOH1029
E	HOH1030
E	HOH1031
E	HOH1032

site_id	CC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1020

Chain	Residue
E	HOH1033
E	HOH1034
E	HOH1035
E	HOH1036
E	HOH1037
E	HOH1038

site_id	CC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG E 1021

Chain	Residue
E	G69
E	C70
E	U106
E	HOH1039
E	HOH1040
E	HOH1041
E	HOH1042

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1022

Chain	Residue
E	G77
E	HOH1043
E	HOH1044
E	HOH1045
E	HOH1046
E	HOH1047

site_id	CC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1023

Chain	Residue
E	HOH58
E	A115
E	HOH1048
E	HOH1049
E	HOH1050
E	HOH1051

site_id	CC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1024

Chain	Residue
E	HOH66
E	HOH1052
E	HOH1053
E	HOH1054
E	HOH1055
E	HOH1056

site_id	DC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1025

Chain	Residue
E	HOH1057
E	HOH1058
E	HOH1059
E	HOH1060
E	HOH1061
E	HOH1062

site_id	DC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1026

Chain	Residue
E	HOH1063
E	HOH1064
E	HOH1065
E	HOH1066
E	HOH1067
E	HOH1068

site_id	DC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1027

Chain	Residue
E	HOH1069
E	HOH1070
E	HOH1071
E	HOH1072
E	HOH1073
E	HOH1074

site_id	DC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1028

Chain	Residue
E	HOH1075
E	HOH1076
E	HOH1077
E	HOH1078
E	HOH1079
E	HOH1080

site_id	DC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 130

Chain	Residue
E	HOH129
E	HOH131
E	HOH132
E	HOH133
E	HOH134
E	HOH135

site_id	DC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 191

Chain	Residue
E	HOH190
E	HOH192
E	HOH193
E	HOH194
E	HOH195
E	HOH196

site_id	DC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE MG E 203

Chain	Residue
E	A4
E	A6

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	MOD_RES: N-acetylalanine => ECO:0000269\|Ref.4, ECO:0007744\|PubMed:19413330

Chain	Residue	Details
B	ALA2
D	ALA2

site_id	SWS_FT_FI2
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0007744\|PubMed:19608861

Chain	Residue	Details
B	LYS60
D	LYS60

224572

PDB entries from 2024-09-04

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