3HAE

Rational development of high-affinity T-cell receptor-like antibodies

Replaces:  3GJG

Functional Information from GO Data

Chain	GOid	namespace	contents
B	0000139	cellular_component	Golgi membrane
B	0001913	biological_process	T cell mediated cytotoxicity
B	0001916	biological_process	positive regulation of T cell mediated cytotoxicity
B	0002237	biological_process	response to molecule of bacterial origin
B	0002376	biological_process	immune system process
B	0002474	biological_process	antigen processing and presentation of peptide antigen via MHC class I
B	0002481	biological_process	antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
B	0002502	biological_process	peptide antigen assembly with MHC class I protein complex
B	0002503	biological_process	peptide antigen assembly with MHC class II protein complex
B	0002726	biological_process	positive regulation of T cell cytokine production
B	0005198	molecular_function	structural molecule activity
B	0005515	molecular_function	protein binding
B	0005576	cellular_component	extracellular region
B	0005615	cellular_component	extracellular space
B	0005765	cellular_component	lysosomal membrane
B	0005783	cellular_component	endoplasmic reticulum
B	0005788	cellular_component	endoplasmic reticulum lumen
B	0005794	cellular_component	Golgi apparatus
B	0005829	cellular_component	cytosol
B	0005886	cellular_component	plasma membrane
B	0005925	cellular_component	focal adhesion
B	0006826	biological_process	iron ion transport
B	0006879	biological_process	intracellular iron ion homeostasis
B	0006955	biological_process	immune response
B	0007608	biological_process	sensory perception of smell
B	0007611	biological_process	learning or memory
B	0009897	cellular_component	external side of plasma membrane
B	0009986	cellular_component	cell surface
B	0010977	biological_process	negative regulation of neuron projection development
B	0012507	cellular_component	ER to Golgi transport vesicle membrane
B	0016020	cellular_component	membrane
B	0019885	biological_process	antigen processing and presentation of endogenous peptide antigen via MHC class I
B	0019886	biological_process	antigen processing and presentation of exogenous peptide antigen via MHC class II
B	0023026	molecular_function	MHC class II protein complex binding
B	0030670	cellular_component	phagocytic vesicle membrane
B	0031901	cellular_component	early endosome membrane
B	0031902	cellular_component	late endosome membrane
B	0031905	cellular_component	early endosome lumen
B	0032092	biological_process	positive regulation of protein binding
B	0033077	biological_process	T cell differentiation in thymus
B	0034756	biological_process	regulation of iron ion transport
B	0035580	cellular_component	specific granule lumen
B	0042026	biological_process	protein refolding
B	0042605	molecular_function	peptide antigen binding
B	0042612	cellular_component	MHC class I protein complex
B	0042613	cellular_component	MHC class II protein complex
B	0042802	molecular_function	identical protein binding
B	0042803	molecular_function	protein homodimerization activity
B	0042824	cellular_component	MHC class I peptide loading complex
B	0045646	biological_process	regulation of erythrocyte differentiation
B	0048260	biological_process	positive regulation of receptor-mediated endocytosis
B	0050680	biological_process	negative regulation of epithelial cell proliferation
B	0050768	biological_process	negative regulation of neurogenesis
B	0050778	biological_process	positive regulation of immune response
B	0050870	biological_process	positive regulation of T cell activation
B	0051289	biological_process	protein homotetramerization
B	0055038	cellular_component	recycling endosome membrane
B	0060586	biological_process	multicellular organismal-level iron ion homeostasis
B	0070062	cellular_component	extracellular exosome
B	0071281	biological_process	cellular response to iron ion
B	0071283	biological_process	cellular response to iron(III) ion
B	0071316	biological_process	cellular response to nicotine
B	1900121	biological_process	negative regulation of receptor binding
B	1900122	biological_process	positive regulation of receptor binding
B	1904434	biological_process	positive regulation of ferrous iron binding
B	1904437	biological_process	positive regulation of transferrin receptor binding
B	1904724	cellular_component	tertiary granule lumen
B	1990000	biological_process	amyloid fibril formation
B	1990712	cellular_component	HFE-transferrin receptor complex
B	2000774	biological_process	positive regulation of cellular senescence
B	2000978	biological_process	negative regulation of forebrain neuron differentiation
E	0000139	cellular_component	Golgi membrane
E	0001913	biological_process	T cell mediated cytotoxicity
E	0001916	biological_process	positive regulation of T cell mediated cytotoxicity
E	0002237	biological_process	response to molecule of bacterial origin
E	0002376	biological_process	immune system process
E	0002474	biological_process	antigen processing and presentation of peptide antigen via MHC class I
E	0002481	biological_process	antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
E	0002502	biological_process	peptide antigen assembly with MHC class I protein complex
E	0002503	biological_process	peptide antigen assembly with MHC class II protein complex
E	0002726	biological_process	positive regulation of T cell cytokine production
E	0005198	molecular_function	structural molecule activity
E	0005515	molecular_function	protein binding
E	0005576	cellular_component	extracellular region
E	0005615	cellular_component	extracellular space
E	0005765	cellular_component	lysosomal membrane
E	0005783	cellular_component	endoplasmic reticulum
E	0005788	cellular_component	endoplasmic reticulum lumen
E	0005794	cellular_component	Golgi apparatus
E	0005829	cellular_component	cytosol
E	0005886	cellular_component	plasma membrane
E	0005925	cellular_component	focal adhesion
E	0006826	biological_process	iron ion transport
E	0006879	biological_process	intracellular iron ion homeostasis
E	0006955	biological_process	immune response
E	0007608	biological_process	sensory perception of smell
E	0007611	biological_process	learning or memory
E	0009897	cellular_component	external side of plasma membrane
E	0009986	cellular_component	cell surface
E	0010977	biological_process	negative regulation of neuron projection development
E	0012507	cellular_component	ER to Golgi transport vesicle membrane
E	0016020	cellular_component	membrane
E	0019885	biological_process	antigen processing and presentation of endogenous peptide antigen via MHC class I
E	0019886	biological_process	antigen processing and presentation of exogenous peptide antigen via MHC class II
E	0023026	molecular_function	MHC class II protein complex binding
E	0030670	cellular_component	phagocytic vesicle membrane
E	0031901	cellular_component	early endosome membrane
E	0031902	cellular_component	late endosome membrane
E	0031905	cellular_component	early endosome lumen
E	0032092	biological_process	positive regulation of protein binding
E	0033077	biological_process	T cell differentiation in thymus
E	0034756	biological_process	regulation of iron ion transport
E	0035580	cellular_component	specific granule lumen
E	0042026	biological_process	protein refolding
E	0042605	molecular_function	peptide antigen binding
E	0042612	cellular_component	MHC class I protein complex
E	0042613	cellular_component	MHC class II protein complex
E	0042802	molecular_function	identical protein binding
E	0042803	molecular_function	protein homodimerization activity
E	0042824	cellular_component	MHC class I peptide loading complex
E	0045646	biological_process	regulation of erythrocyte differentiation
E	0048260	biological_process	positive regulation of receptor-mediated endocytosis
E	0050680	biological_process	negative regulation of epithelial cell proliferation
E	0050768	biological_process	negative regulation of neurogenesis
E	0050778	biological_process	positive regulation of immune response
E	0050870	biological_process	positive regulation of T cell activation
E	0051289	biological_process	protein homotetramerization
E	0055038	cellular_component	recycling endosome membrane
E	0060586	biological_process	multicellular organismal-level iron ion homeostasis
E	0070062	cellular_component	extracellular exosome
E	0071281	biological_process	cellular response to iron ion
E	0071283	biological_process	cellular response to iron(III) ion
E	0071316	biological_process	cellular response to nicotine
E	1900121	biological_process	negative regulation of receptor binding
E	1900122	biological_process	positive regulation of receptor binding
E	1904434	biological_process	positive regulation of ferrous iron binding
E	1904437	biological_process	positive regulation of transferrin receptor binding
E	1904724	cellular_component	tertiary granule lumen
E	1990000	biological_process	amyloid fibril formation
E	1990712	cellular_component	HFE-transferrin receptor complex
E	2000774	biological_process	positive regulation of cellular senescence
E	2000978	biological_process	negative regulation of forebrain neuron differentiation
K	0000139	cellular_component	Golgi membrane
K	0001913	biological_process	T cell mediated cytotoxicity
K	0001916	biological_process	positive regulation of T cell mediated cytotoxicity
K	0002237	biological_process	response to molecule of bacterial origin
K	0002376	biological_process	immune system process
K	0002474	biological_process	antigen processing and presentation of peptide antigen via MHC class I
K	0002481	biological_process	antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
K	0002502	biological_process	peptide antigen assembly with MHC class I protein complex
K	0002503	biological_process	peptide antigen assembly with MHC class II protein complex
K	0002726	biological_process	positive regulation of T cell cytokine production
K	0005198	molecular_function	structural molecule activity
K	0005515	molecular_function	protein binding
K	0005576	cellular_component	extracellular region
K	0005615	cellular_component	extracellular space
K	0005765	cellular_component	lysosomal membrane
K	0005783	cellular_component	endoplasmic reticulum
K	0005788	cellular_component	endoplasmic reticulum lumen
K	0005794	cellular_component	Golgi apparatus
K	0005829	cellular_component	cytosol
K	0005886	cellular_component	plasma membrane
K	0005925	cellular_component	focal adhesion
K	0006826	biological_process	iron ion transport
K	0006879	biological_process	intracellular iron ion homeostasis
K	0006955	biological_process	immune response
K	0007608	biological_process	sensory perception of smell
K	0007611	biological_process	learning or memory
K	0009897	cellular_component	external side of plasma membrane
K	0009986	cellular_component	cell surface
K	0010977	biological_process	negative regulation of neuron projection development
K	0012507	cellular_component	ER to Golgi transport vesicle membrane
K	0016020	cellular_component	membrane
K	0019885	biological_process	antigen processing and presentation of endogenous peptide antigen via MHC class I
K	0019886	biological_process	antigen processing and presentation of exogenous peptide antigen via MHC class II
K	0023026	molecular_function	MHC class II protein complex binding
K	0030670	cellular_component	phagocytic vesicle membrane
K	0031901	cellular_component	early endosome membrane
K	0031902	cellular_component	late endosome membrane
K	0031905	cellular_component	early endosome lumen
K	0032092	biological_process	positive regulation of protein binding
K	0033077	biological_process	T cell differentiation in thymus
K	0034756	biological_process	regulation of iron ion transport
K	0035580	cellular_component	specific granule lumen
K	0042026	biological_process	protein refolding
K	0042605	molecular_function	peptide antigen binding
K	0042612	cellular_component	MHC class I protein complex
K	0042613	cellular_component	MHC class II protein complex
K	0042802	molecular_function	identical protein binding
K	0042803	molecular_function	protein homodimerization activity
K	0042824	cellular_component	MHC class I peptide loading complex
K	0045646	biological_process	regulation of erythrocyte differentiation
K	0048260	biological_process	positive regulation of receptor-mediated endocytosis
K	0050680	biological_process	negative regulation of epithelial cell proliferation
K	0050768	biological_process	negative regulation of neurogenesis
K	0050778	biological_process	positive regulation of immune response
K	0050870	biological_process	positive regulation of T cell activation
K	0051289	biological_process	protein homotetramerization
K	0055038	cellular_component	recycling endosome membrane
K	0060586	biological_process	multicellular organismal-level iron ion homeostasis
K	0070062	cellular_component	extracellular exosome
K	0071281	biological_process	cellular response to iron ion
K	0071283	biological_process	cellular response to iron(III) ion
K	0071316	biological_process	cellular response to nicotine
K	1900121	biological_process	negative regulation of receptor binding
K	1900122	biological_process	positive regulation of receptor binding
K	1904434	biological_process	positive regulation of ferrous iron binding
K	1904437	biological_process	positive regulation of transferrin receptor binding
K	1904724	cellular_component	tertiary granule lumen
K	1990000	biological_process	amyloid fibril formation
K	1990712	cellular_component	HFE-transferrin receptor complex
K	2000774	biological_process	positive regulation of cellular senescence
K	2000978	biological_process	negative regulation of forebrain neuron differentiation
Q	0000139	cellular_component	Golgi membrane
Q	0001913	biological_process	T cell mediated cytotoxicity
Q	0001916	biological_process	positive regulation of T cell mediated cytotoxicity
Q	0002237	biological_process	response to molecule of bacterial origin
Q	0002376	biological_process	immune system process
Q	0002474	biological_process	antigen processing and presentation of peptide antigen via MHC class I
Q	0002481	biological_process	antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
Q	0002502	biological_process	peptide antigen assembly with MHC class I protein complex
Q	0002503	biological_process	peptide antigen assembly with MHC class II protein complex
Q	0002726	biological_process	positive regulation of T cell cytokine production
Q	0005198	molecular_function	structural molecule activity
Q	0005515	molecular_function	protein binding
Q	0005576	cellular_component	extracellular region
Q	0005615	cellular_component	extracellular space
Q	0005765	cellular_component	lysosomal membrane
Q	0005783	cellular_component	endoplasmic reticulum
Q	0005788	cellular_component	endoplasmic reticulum lumen
Q	0005794	cellular_component	Golgi apparatus
Q	0005829	cellular_component	cytosol
Q	0005886	cellular_component	plasma membrane
Q	0005925	cellular_component	focal adhesion
Q	0006826	biological_process	iron ion transport
Q	0006879	biological_process	intracellular iron ion homeostasis
Q	0006955	biological_process	immune response
Q	0007608	biological_process	sensory perception of smell
Q	0007611	biological_process	learning or memory
Q	0009897	cellular_component	external side of plasma membrane
Q	0009986	cellular_component	cell surface
Q	0010977	biological_process	negative regulation of neuron projection development
Q	0012507	cellular_component	ER to Golgi transport vesicle membrane
Q	0016020	cellular_component	membrane
Q	0019885	biological_process	antigen processing and presentation of endogenous peptide antigen via MHC class I
Q	0019886	biological_process	antigen processing and presentation of exogenous peptide antigen via MHC class II
Q	0023026	molecular_function	MHC class II protein complex binding
Q	0030670	cellular_component	phagocytic vesicle membrane
Q	0031901	cellular_component	early endosome membrane
Q	0031902	cellular_component	late endosome membrane
Q	0031905	cellular_component	early endosome lumen
Q	0032092	biological_process	positive regulation of protein binding
Q	0033077	biological_process	T cell differentiation in thymus
Q	0034756	biological_process	regulation of iron ion transport
Q	0035580	cellular_component	specific granule lumen
Q	0042026	biological_process	protein refolding
Q	0042605	molecular_function	peptide antigen binding
Q	0042612	cellular_component	MHC class I protein complex
Q	0042613	cellular_component	MHC class II protein complex
Q	0042802	molecular_function	identical protein binding
Q	0042803	molecular_function	protein homodimerization activity
Q	0042824	cellular_component	MHC class I peptide loading complex
Q	0045646	biological_process	regulation of erythrocyte differentiation
Q	0048260	biological_process	positive regulation of receptor-mediated endocytosis
Q	0050680	biological_process	negative regulation of epithelial cell proliferation
Q	0050768	biological_process	negative regulation of neurogenesis
Q	0050778	biological_process	positive regulation of immune response
Q	0050870	biological_process	positive regulation of T cell activation
Q	0051289	biological_process	protein homotetramerization
Q	0055038	cellular_component	recycling endosome membrane
Q	0060586	biological_process	multicellular organismal-level iron ion homeostasis
Q	0070062	cellular_component	extracellular exosome
Q	0071281	biological_process	cellular response to iron ion
Q	0071283	biological_process	cellular response to iron(III) ion
Q	0071316	biological_process	cellular response to nicotine
Q	1900121	biological_process	negative regulation of receptor binding
Q	1900122	biological_process	positive regulation of receptor binding
Q	1904434	biological_process	positive regulation of ferrous iron binding
Q	1904437	biological_process	positive regulation of transferrin receptor binding
Q	1904724	cellular_component	tertiary granule lumen
Q	1990000	biological_process	amyloid fibril formation
Q	1990712	cellular_component	HFE-transferrin receptor complex
Q	2000774	biological_process	positive regulation of cellular senescence
Q	2000978	biological_process	negative regulation of forebrain neuron differentiation

Functional Information from PROSITE/UniProt

site_id	PS00290
Number of Residues	7
Details	IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YSCQVTH

Chain	Residue	Details
L	TYR194-HIS200
B	TYR78-HIS84
A	TYR257-HIS263
H	TYR200-HIS206

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	MOD_RES: Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280

Chain	Residue	Details
B	GLN2
D	THR143
D	LYS146
D	TYR171
J	TYR7
J	THR73
J	TYR84
J	THR143
J	LYS146
J	TYR171
P	TYR7
E	GLN2
P	THR73
P	TYR84
P	THR143
P	LYS146
P	TYR171
K	GLN2
Q	GLN2
A	LYS146
A	TYR171
D	TYR7
D	THR73
D	TYR84

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	CARBOHYD: N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443

Chain	Residue	Details
B	ILE1
E	ILE1
K	ILE1
Q	ILE1
J	TYR116
J	TYR159
P	TYR116
P	TYR159

---

site_id	SWS_FT_FI3
Number of Residues	24
Details	CARBOHYD: N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443

Chain	Residue	Details
B	LYS19
E	LYS58
E	LYS91
E	LYS94
K	LYS19
K	LYS41
K	LYS48
K	LYS58
K	LYS91
K	LYS94
Q	LYS19
B	LYS41
Q	LYS41
Q	LYS48
Q	LYS58
Q	LYS91
Q	LYS94
B	LYS48
B	LYS58
B	LYS91
B	LYS94
E	LYS19
E	LYS41
E	LYS48

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218

Chain	Residue	Details
A	ASN86
D	ASN86
J	ASN86
P	ASN86

---